Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq34497 178 2e-39 >seq34497 Length=166879 Score = 178 bits (196), Expect = 2e-39 Identities = 189/247 (77%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| ||||| || || || | || | ||||| |||||||||| ||| | ||| || Sbjct 39851 GACCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAGATGCGGTTTAATCTG-GC 39909 Query 196131 AAAGGGTT-CCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 ||||| |||| || | |||||||| ||| | || ||| ||| ||| |||| ||||| Sbjct 39910 GTCGGGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGAAATCGATCGTCCATGAACT 39969 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | ||||||| ||| ||||||||||| ||| |||| |||| |||||| |||| | || Sbjct 39970 GCTGTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGAACGACAACGGCGTCCGCAT 40029 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||||||||||||| || ||| | ||| |||| |||||||| ||||| ||||||||| Sbjct 40030 CTGGGATGAGTGGGCGGACGAAAACGGCAATCTCGGCCCCGTTTACGGATCGCAGTGGCG 40089 Query 196310 TGCATGG 196316 ||||| Sbjct 40090 CTCATGG 40096 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/189 (70%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 |||||||| ||||| |||||||| || || ||||||||||| || |||||||||||| Sbjct 40268 CTGTCCTGCCAGCTCTACCAGCGTTCAGCGGATGTCTTCCTCGGCGTGCCGTTCAACATC 40327 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCA---ATATGGTGGCGGGT 196865 || || || || ||| || |||||||| |||||||| || | | || Sbjct 40328 GCGTCCTATGCGCTGCTGACAATGATGGTGGC---GCAGGTCACCGGCCTGAAGCCCGGC 40384 Query 196866 GATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACG 196925 |||||||| || |||||| | ||||| || || ||||| || || ||||| | Sbjct 40385 GATTTCGTGCATTCGCTTGGCGATGCGCATCTTTATTCAAACCACCTCGACCAGGCGCGG 40444 Query 196926 TTGCAGCTC 196934 |||| ||| Sbjct 40445 CTGCAACTC 40453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769659824200280