Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq47808 98.7 1e-15 seq47532 98.7 1e-15 seq38762 98.7 1e-15 seq38761 98.7 1e-15 >seq47808 Length=3094 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||||| || ||||| |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct 746 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 805 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | || || ||| || || | || ||||||||| |||||||||||| || Sbjct 806 GGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCT 865 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATG-TAAGAATAT 16673 || || || || |||| | |||||| ||||| | | ||||| | || | || | Sbjct 866 GGCGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATT 924 Query 16674 GCCAATCTTTTAAATCTTTGGA---TATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 ||| | || | || ||| | ||| |||||||| | ||||| ||| |||| Sbjct 925 CCCAGTGCTTCATGTC---GGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCT 981 Query 16731 CTGCCTTTTTATACATTTTCCAAAT 16755 | ||||| || ||||| | ||| || Sbjct 982 CGGCCTTCTTGTACATCTCCCAGAT 1006 >seq47532 Length=3156 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||||| || ||||| |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct 2411 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 2352 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | || || ||| || || | || ||||||||| |||||||||||| || Sbjct 2351 GGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCT 2292 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATG-TAAGAATAT 16673 || || || || |||| | |||||| ||||| | | ||||| | || | || | Sbjct 2291 GGCGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATT 2233 Query 16674 GCCAATCTTTTAAATCTTTGGA---TATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 ||| | || | || ||| | ||| |||||||| | ||||| ||| |||| Sbjct 2232 CCCAGTGCTTCATGTC---GGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCT 2176 Query 16731 CTGCCTTTTTATACATTTTCCAAAT 16755 | ||||| || ||||| | ||| || Sbjct 2175 CGGCCTTCTTGTACATCTCCCAGAT 2151 >seq38762 Length=2104 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||||| || ||||| |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct 1577 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1636 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | || || ||| || || | || ||||||||| |||||||||||| || Sbjct 1637 GGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCT 1696 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATG-TAAGAATAT 16673 || || || || |||| | |||||| ||||| | | ||||| | || | || | Sbjct 1697 GGCGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATT 1755 Query 16674 GCCAATCTTTTAAATCTTTGGA---TATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 ||| | || | || ||| | ||| |||||||| | ||||| ||| |||| Sbjct 1756 CCCAGTGCTTCATGTC---GGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCT 1812 Query 16731 CTGCCTTTTTATACATTTTCCAAAT 16755 | ||||| || ||||| | ||| || Sbjct 1813 CGGCCTTCTTGTACATCTCCCAGAT 1837 >seq38761 Length=2091 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||||| || ||||| |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct 1564 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1623 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | || || ||| || || | || ||||||||| |||||||||||| || Sbjct 1624 GGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCT 1683 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATG-TAAGAATAT 16673 || || || || |||| | |||||| ||||| | | ||||| | || | || | Sbjct 1684 GGCGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATT 1742 Query 16674 GCCAATCTTTTAAATCTTTGGA---TATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 ||| | || | || ||| | ||| |||||||| | ||||| ||| |||| Sbjct 1743 CCCAGTGCTTCATGTC---GGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCT 1799 Query 16731 CTGCCTTTTTATACATTTTCCAAAT 16755 | ||||| || ||||| | ||| || Sbjct 1800 CGGCCTTCTTGTACATCTCCCAGAT 1824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511051666551440