Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq54491 86.0 5e-12 >seq54491 Length=272697 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || ||||| |||||| | | ||||| || || || ||||| |||| ||| Sbjct 166199 ATGGCGCTGCCTCCGTGTCACTGCCTGTTCCAGTTCTATGTCGCTAACGGAAAATTGTCC 166140 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 |||||| | |||||| | |||| ||| | || || || ||||||||||| || Sbjct 166139 TGCCAACTGTACCAGCGTTCGGCGGACGTATTTCTCGGCGTGCCGTTCAACATCGCGTCC 166080 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATT 19151 ||||| || || ||| || || ||||| || || || || || |||| || || | Sbjct 166079 TATGCGCTGCTGACCATGATGGTGGCGCAGGTGACTGGGCTGAAGCCCGGCGACTTCGTG 166020 Query 19152 CATACAATGGGGGATGCACATATTTACTTGAATCATATAGAT 19193 ||| | | || ||||| ||| | || | ||| ||| | ||| Sbjct 166019 CATTCGCTCGGCGATGCGCATCTCTATTCGAACCATCTCGAT 165978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399227725755390