Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq47808 145 9e-30 seq47532 145 9e-30 seq38762 145 9e-30 seq38761 145 9e-30 >seq47808 Length=3094 Score = 145 bits (160), Expect = 9e-30 Identities = 373/560 (67%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 450 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 509 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 510 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 568 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCAT- 24309 || || || || || ||||| | || || | || | | || ||| || | Sbjct 569 GATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTT 628 Query 24310 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 629 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 688 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||||| || ||||| ||| || || || || || || | || || Sbjct 689 GCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 748 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || || || ||||| || ||||| || || || |||||||| || | ||||||| Sbjct 749 CATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 808 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | ||| || || | || || | || | || ||| ||| || ||||| ||||| Sbjct 809 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGC 868 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 24606 || || || |||| || || || || || | | ||||| | |||| || | || Sbjct 869 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 927 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | || || || | | ||| |||||||| | ||||| || || ||||| |||| Sbjct 928 AGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCT 987 Query 24667 TTTTATACATATTCCAGATG 24686 | || ||||| | ||||||| Sbjct 988 TCTTGTACATCTCCCAGATG 1007 >seq47532 Length=3156 Score = 145 bits (160), Expect = 9e-30 Identities = 373/560 (67%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 2707 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2648 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 2647 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2589 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCAT- 24309 || || || || || ||||| | || || | || | | || ||| || | Sbjct 2588 GATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTT 2529 Query 24310 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 2528 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 2469 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||||| || ||||| ||| || || || || || || | || || Sbjct 2468 GCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 2409 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || || || ||||| || ||||| || || || |||||||| || | ||||||| Sbjct 2408 CATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 2349 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | ||| || || | || || | || | || ||| ||| || ||||| ||||| Sbjct 2348 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGC 2289 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 24606 || || || |||| || || || || || | | ||||| | |||| || | || Sbjct 2288 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 2230 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | || || || | | ||| |||||||| | ||||| || || ||||| |||| Sbjct 2229 AGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCT 2170 Query 24667 TTTTATACATATTCCAGATG 24686 | || ||||| | ||||||| Sbjct 2169 TCTTGTACATCTCCCAGATG 2150 >seq38762 Length=2104 Score = 145 bits (160), Expect = 9e-30 Identities = 373/560 (67%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 1281 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1340 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 1341 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1399 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCAT- 24309 || || || || || ||||| | || || | || | | || ||| || | Sbjct 1400 GATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTT 1459 Query 24310 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 1460 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 1519 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||||| || ||||| ||| || || || || || || | || || Sbjct 1520 GCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 1579 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || || || ||||| || ||||| || || || |||||||| || | ||||||| Sbjct 1580 CATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 1639 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | ||| || || | || || | || | || ||| ||| || ||||| ||||| Sbjct 1640 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGC 1699 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 24606 || || || |||| || || || || || | | ||||| | |||| || | || Sbjct 1700 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 1758 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | || || || | | ||| |||||||| | ||||| || || ||||| |||| Sbjct 1759 AGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCT 1818 Query 24667 TTTTATACATATTCCAGATG 24686 | || ||||| | ||||||| Sbjct 1819 TCTTGTACATCTCCCAGATG 1838 >seq38761 Length=2091 Score = 145 bits (160), Expect = 9e-30 Identities = 373/560 (67%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 1268 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1327 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 1328 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1386 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCAT- 24309 || || || || || ||||| | || || | || | | || ||| || | Sbjct 1387 GATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTT 1446 Query 24310 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 1447 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 1506 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||||| || ||||| ||| || || || || || || | || || Sbjct 1507 GCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 1566 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || || || ||||| || ||||| || || || |||||||| || | ||||||| Sbjct 1567 CATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 1626 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | ||| || || | || || | || | || ||| ||| || ||||| ||||| Sbjct 1627 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGC 1686 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 24606 || || || |||| || || || || || | | ||||| | |||| || | || Sbjct 1687 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 1745 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | || || || | | ||| |||||||| | ||||| || || ||||| |||| Sbjct 1746 AGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCT 1805 Query 24667 TTTTATACATATTCCAGATG 24686 | || ||||| | ||||||| Sbjct 1806 TCTTGTACATCTCCCAGATG 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593300488112160