Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq27440 152 6e-32 seq54491 105 8e-18 >seq27440 Length=426762 Score = 152 bits (168), Expect = 6e-32 Identities = 182/245 (74%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 145668 GGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGAC 145727 ||| |||||||||||| |||||| ||||||| |||| |||||||| || | || Sbjct 329488 GGTGAGCTGGAGCTTCGCCTGCTCCAGGTGGTTGGAATAGAGATGCGCGTCGCCGA--AC 329431 Query 145728 G--TGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGG 145785 | || | ||| || ||||||| || || |||| || || ||||| ||| ||||| Sbjct 329430 GAATGCACGAAATCGCCGGGCTTCAGACCGGTGACCTGCGCCACCATCATGGTGAGCAGC 329371 Query 145786 GAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGC 145845 |||||| ||| |||||||||||||| || || | ||| | |||||||| || ||| Sbjct 329370 GAGTAGGAGGCGATGTTGAAGGGCACGCCGAGGAAGACGTCGGCGGAGCGCTGATAGAGC 329311 Query 145846 TGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGG 145905 || ||||| |||| ||| || |||||||||||| ||||| ||||| |||||||| Sbjct 329310 TGACAGGACAGCTTGCCGTTGGCGACGTAGAACTGGAACAGGCAATGGCACGGCGGCAGC 329251 Query 145906 GCCAT 145910 ||||| Sbjct 329250 GCCAT 329246 >seq54491 Length=272697 Score = 105 bits (116), Expect = 8e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 145705 TAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGG 145764 |||| ||||| || || || || | |||||| ||||||| || || || | || Sbjct 165994 TAGAGATGCGCATCGCCGAGCGAATGCACGAAGTCGCCGGGCTTCAGCCCAGTCACCTGC 166053 Query 145765 GCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATG 145824 || ||||| ||||||||| | ||| || |||||||| ||||| || || | | Sbjct 166054 GCCACCATCATGGTCAGCAGCGCATAGGACGCGATGTTGAACGGCACGCCGAGAAATACG 166113 Query 145825 TCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCAC 145884 ||| |||| ||||||||||| |||||||| | | ||| || || ||||||||| || Sbjct 166114 TCCGCCGAACGCTGGTACAGTTGGCAGGACAATTTTCCGTTAGCGACATAGAACTGGAAC 166173 Query 145885 AGGAGGTGGCAGGGCGGCAGGGCCAT 145910 ||| ||| || || ||||| ||||| Sbjct 166174 AGGCAGTGACACGGAGGCAGCGCCAT 166199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589658273277680