Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq42602 105 1e-17 seq38368 105 1e-17 seq38367 105 1e-17 seq30353 105 1e-17 seq52066 87.8 4e-12 seq47684 87.8 4e-12 seq32863 87.8 4e-12 >seq42602 Length=5458 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 4886 CGCAAGGGCGCCTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATTTTTGACTTCCTC 4827 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 4826 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 4767 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 ||| | ||||| | |||||| | ||||| || | | |||||| ||| |||| Sbjct 4766 TGGATTCCCGACCTCTTCATGAGGCGCGTGGAGTCGGGCGGCGACTGGTCGCT 4714 >seq38368 Length=5470 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 573 CGCAAGGGCGCCTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATTTTTGACTTCCTC 632 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 633 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 692 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 ||| | ||||| | |||||| | ||||| || | | |||||| ||| |||| Sbjct 693 TGGATTCCCGACCTCTTCATGAGGCGCGTGGAGTCGGGCGGCGACTGGTCGCT 745 >seq38367 Length=4245 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 2484 CGCAAGGGCGCCTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATTTTTGACTTCCTC 2425 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 2424 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 2365 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 ||| | ||||| | |||||| | ||||| || | | |||||| ||| |||| Sbjct 2364 TGGATTCCCGACCTCTTCATGAGGCGCGTGGAGTCGGGCGGCGACTGGTCGCT 2312 >seq30353 Length=5073 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 2590 CGCAAGGGCGCCTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATTTTTGACTTCCTC 2649 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 2650 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 2709 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 ||| | ||||| | |||||| | ||||| || | | |||||| ||| |||| Sbjct 2710 TGGATTCCCGACCTCTTCATGAGGCGCGTGGAGTCGGGCGGCGACTGGTCGCT 2762 >seq52066 Length=5953 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||||| | ||||||||||| |||||| ||||||| ||||||| || Sbjct 3221 TGCCCGCCATACAAGCTCATCATCCTGGACGAAGCGGACTCCATGACACCCGACGCCCAA 3280 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||| || || || | || |||| ||||| || || || || ||| || | ||| Sbjct 3281 GCCGCGCTTCGACGCATCATTGAGAACTACTCCAGGGTCACACGGTTCTGCTTGATTTGC 3340 Query 254322 AACTACGT 254329 |||||||| Sbjct 3341 AACTACGT 3348 >seq47684 Length=6668 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||||| | ||||||||||| |||||| ||||||| ||||||| || Sbjct 5700 TGCCCGCCATACAAGCTCATCATCCTGGACGAAGCGGACTCCATGACACCCGACGCCCAA 5759 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||| || || || | || |||| ||||| || || || || ||| || | ||| Sbjct 5760 GCCGCGCTTCGACGCATCATTGAGAACTACTCCAGGGTCACACGGTTCTGCTTGATTTGC 5819 Query 254322 AACTACGT 254329 |||||||| Sbjct 5820 AACTACGT 5827 >seq32863 Length=5878 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||||| | ||||||||||| |||||| ||||||| ||||||| || Sbjct 2658 TGCCCGCCATACAAGCTCATCATCCTGGACGAAGCGGACTCCATGACACCCGACGCCCAA 2599 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||| || || || | || |||| ||||| || || || || ||| || | ||| Sbjct 2598 GCCGCGCTTCGACGCATCATTGAGAACTACTCCAGGGTCACACGGTTCTGCTTGATTTGC 2539 Query 254322 AACTACGT 254329 |||||||| Sbjct 2538 AACTACGT 2531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072985764445056