Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_003085.1 Length=49534 Score E Sequences producing significant alignments: (Bits) Value seq29640 93.3 1e-14 >seq29640 Length=260894 Score = 93.3 bits (102), Expect = 1e-14 Identities = 281/427 (66%), Gaps = 8/427 (2%) Strand=Plus/Minus Query 1936 GTGTGGCGGAAGCAGAACGGCAGCGGCTTCGCCACCGACAGGTTCCGCCGCGTGCATGAG 1995 || ||| |||||||||||||| ||||||| || ||| | ||| |||||||||||| Sbjct 190601 GTCTGGGAGAAGCAGAACGGCACCGGCTTCCACAATGACCGCTTCAAGCGCGTGCATGAG 190542 Query 1996 CAGCCCGTCCACTTCTACCGAGCGGATGCGGCGTGGCGCGATGTGTTCCACCAAGTGCCC 2055 | ||||||| ||||| | || || |||| |||||||| | | | || | || | Sbjct 190541 TTGGCCGTCCAGTTCTATCCCGCCGAGACGGCCTGGCGCGACATCTACAACGACGTCCAG 190482 Query 2056 GTCACCATGGATGCCAAGGCCCGGACGGTGACGCGACGAGC-GCAGCCGCCGCACCTCGG 2114 ||| |||||| | || || ||||| ||| | ||| | || || ||| ||| Sbjct 190481 ACCACGCCGGATGCGACAGCGCGCACGGTTCGGCG-CAAGCAACGTCCTCCCCACACCGG 190423 Query 2115 CGCCATCGGCGCCCACAAGTACACGTC--CGAGGACGGCGGCCCCCGCCTCATGACGTCC 2172 | |||| |||| | | | | ||| | | |||||||| || ||||||||| ||| Sbjct 190422 CCAGATCGACGCCGGCCACT--ATGTCAGCCACGACGGCGGGCCGCGCCTCATGCGGTCA 190365 Query 2173 GTGCTGGAAGTGCGAAACTGCCACGGGTTCGCCGTCAACGAGACACAGAAGCCAGTGGCG 2232 || | | || || ||||||||||| ||| || | ||| ||||||| || Sbjct 190364 GTCATCTATGTCCGCAACTGCCACGGTCGCGCGATCCATCCGACCGAGAAGCCGTCATCG 190305 Query 2233 CTCGTGGAACCGCTGGTGCGCAATGCCTGCCCACCGGGGGGCCTCGTCGCGGACTTCTTC 2292 || | ||| ||| | || | || || | ||||| |||| |||| ||| Sbjct 190304 CTGCTCGAAATTCTGATTCGTACCAGTTGTCCCGAAAGCGGCCTGGTCGGCGACTGGTTC 190245 Query 2293 GCGGGCTCCGGCAGCAC-GGCGCTGGCCTGCCTCGCCACCGGCCGCCGCTTCATCGGTTG 2351 || ||||||||| | | |||| ||||||| ||||||| |||| ||||||| Sbjct 190244 GCCGGCTCCGGCTCCGCTGGCG-AAGCCTGCCGGCTGTCCGGCCGGCGCTATCTCGGTTG 190186 Query 2352 CGACATC 2358 || ||| Sbjct 190185 TGAGATC 190179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158280476922784