Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq30610 165 3e-36 seq47259 163 1e-35 seq53501 125 3e-24 seq24082 118 4e-22 seq56171 111 6e-20 seq48397 87.8 7e-13 seq53101 80.6 1e-10 seq24986 80.6 1e-10 seq24077 80.6 1e-10 >seq30610 Length=171584 Score = 165 bits (182), Expect = 3e-36 Identities = 169/213 (79%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127 ||| || ||||| ||| | |||||| || ||||| | ||| || ||| |||||||||| Sbjct 83266 CATCCCTAGCGCCTGC-ATGTAGGTTTCCAGGATCGTCTCCTGTTCCTGACGCTCGTCGG 83324 Query 44128 TGTCCTGCTTGCGCA-GCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCC 44186 |||||||||||||| ||| ||| | | ||||| |||| | ||||||||| | ||| Sbjct 83325 CGTCCTGCTTGCGCATGCG-GATAATGGTGCGCAGCGCCTTGACGTCGAAGCCGTTGCCC 83383 Query 44187 TTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAG 44246 || || || || || || ||||||||||||||| |||||||||||| ||||||||| || Sbjct 83384 TTGGCTTCACCATAGACGTCCTTGATGTCGTCGCTGATGGTCTTCTTCTCTTCCTCC-AG 83442 Query 44247 CGT-TCGATGCGGTGGATGAAGGCCTTGAGCTG 44278 | | |||||||| | ||||| |||||||||||| Sbjct 83443 CTTCTCGATGCGCTCGATGATGGCCTTGAGCTG 83475 >seq47259 Length=37638 Score = 163 bits (180), Expect = 1e-35 Identities = 299/433 (69%), Gaps = 4/433 (1%) Strand=Plus/Plus Query 22932 ATGCCGATACGGCCGAAAGAAGAGTGCGCGACAATAACCGCGTCCCAGTCTCCGGTGGCG 22991 |||||||| |||||| || || |||| ||| || || ||||||| ||||| || ||| Sbjct 34872 ATGCCGATGAAGCCGAACGAGGAATGCGGGACGATGACGACGTCCCAATCTCCCGTCGCG 34931 Query 22992 ATGCGAGCGAACAGGCGCTTGCGGTTCTCCTTCTCGAAATCCTTCTCAGTCGTCGCCAGG 23051 || |||||||| || |||| || ||||||||| | |||| | ||| || Sbjct 34932 ATCTTGGCGAACAGCCGGCGGCGGCCCTTCTTCTCGAACTGGTTCTTGCCGGCCGCGAGC 34991 Query 23052 ACCTTGGCGCCCGGGTAGAGCTTGACGAAATCGGCGCCCCACTGTCCCACGAGGTGGTTG 23111 ||||||||||||||||| || | || || || |||||| | || || ||||| Sbjct 34992 ACCTTGGCGCCCGGGTACAGGCGGTAGACGTCCGCCGTCCACTGGTCGACCAGATGGTTC 35051 Query 23112 GGAACCACGAACATCGGCTTGCGGGCCTGTCCGATGCGTCGCTTTTCCATCGCCGATGCA 23171 || ||||||| ||| |||||||||| | | || || || ||| |||||| | || Sbjct 35052 GGCACCACGATCATGGGCTTGCGGGACAGGCCCATCCGCCGCCGCTCCATCACGCGCGCG 35111 Query 23172 ATGGCGGCAAACGTCTTGCCGGCGCCCACGGTATGGTCGGCGAGCGCGGTACCGCTC-TG 23230 || |||| || |||||||||||||| ||| |||||| ||| | | ||||| | Sbjct 35112 ATCGCGGTGAAGGTCTTGCCGGCGCCGACGACGTGGTCGAGCAGC-ATGAAGCGCTCGTA 35170 Query 23231 CATCGTGCGCCAGATGAAGCTCTTCTGGTGCGGGCGCAACTCGATGATGTCGTCGCCCAC 23290 || |||||| | | |||||||||| |||| | || ||| | || || || Sbjct 35171 GATGCCGCGCCACACAGCGTTCTTCTGGTGGCGGCGGAGCTTGATCACCTCATCCGGGAC 35230 Query 23291 CTTGCCCGGAAGGCTCAGATGCGCGCCGTCATAGCT-GCGCAGGACATCCGTGTTGAAGG 23349 |||||| || ||| || || | |||||| | ||| ||| ||| |||||||| Sbjct 35231 CTTGCCGGGGAGGGCGAGGTGGGAGCCGTCGT-GCTGGCGGTTGACGCGGGTGTTGAACT 35289 Query 23350 TGTCGTTGTAGAT 23362 | ||||||||||| Sbjct 35290 TTTCGTTGTAGAT 35302 Score = 111 bits (122), Expect = 6e-20 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21496 AGAGCTCGTTGCCCTGCCGGATGCCGCGCCCGTCGCGTTGCTCAAGGTCGGACGGCCGCC 21555 |||||| ||||||||| |||||| ||| || ||||| ||||| | |||||| ||| || Sbjct 33409 AGAGCTTGTTGCCCTGGCGGATGATGCGGCCTTCGCGCTGCTCGATGTCGGAGGGCTTCC 33468 Query 21556 ACGGCGCATCGATGTGATGCAGCGCGACGAGGCGGTTTTGGACGTTGGTACCGGCGCCCA 21615 ||| | | ||| || || || ||||| || || | || |||||||| |||||||||| Sbjct 33469 ACGTCACGTCGCCATGGTGGAGGGCGACAAGCCGCTCCTGCACGTTGGTGCCGGCGCCCA 33528 Query 21616 TCTTCGGCGTCGAGCCGAACAGGAACCGGAC 21646 | ||| |||||||||| ||| | ||| || Sbjct 33529 TGCGCGGGGTCGAGCCGATCAGCACCCGCAC 33559 >seq53501 Length=235563 Score = 125 bits (138), Expect = 3e-24 Identities = 136/178 (76%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 44087 GTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGTGTCCTGCTTGCGCA-GCG 44145 ||||||||| ||||| | || ||||||| || ||||| |||||||||||||| || Sbjct 67179 GTAGGTGTCCAGGATTGTCTGTTGCTCCTGTCGTGTGTCGGCGTCCTGCTTGCGCATTCG 67238 Query 44146 AGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTTTGCCTCGCCGTACACAT 44205 | || | | | ||||| ||| | ||||||||| | || || |||||| ||||||| | Sbjct 67239 A-ATGATCGTGCGCAGCGCCTTCACGTCGAAGCCGTTACCTTTGGCCTCGGCGTACACGT 67297 Query 44206 CCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCGTTCGATGCGGTGGAT 44263 |||| ||||||||| ||| | ||||| ||||| |||||||| || ||||| | ||| Sbjct 67298 CCTTAATGTCGTCGCTGATTGCTTTCTTCTCTTCTTCCAAGCGCTCAATGCGCTCGAT 67355 >seq24082 Length=208990 Score = 118 bits (130), Expect = 4e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 44066 GATCATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGT 44124 ||||||||| ||||| ||| | |||||| |||||||| | ||| ||| || |||| Sbjct 79486 GATCATGCCCAGCGCCTGC-ATGTAGGTCTCGAGGATCGTCTCGGCCTCGGCGCGTTCGT 79428 Query 44125 CGGTGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCC 44184 | ||||||||||||||| | | | ||||| |||| | ||| ||||| | | Sbjct 79427 TCGGGTCCTGCTTGCGCAGGCGCACGATGGTGCGCAGCGCCTTGACGTCGTAGCCGTTGC 79368 Query 44185 CCTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCA 44244 |||| |||| | || || || ||||||||||| ||| | ||||||||||||||||| Sbjct 79367 CCTTGCTCTCGGCATAGACGTCGCGGATGTCGTCGGAGATCGCCTTCTTTTCTTCCTCCA 79308 Query 44245 AGCGTTCGATGCGGTGGATGAAGGCCTTGAGCTGATC 44281 || ||||| || | ||||| || |||||||| || Sbjct 79307 GCCGCTCGATACGCTCGATGATGGATTTGAGCTGGTC 79271 >seq56171 Length=386068 Score = 111 bits (122), Expect = 6e-20 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 48647 GCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGG 48706 ||| ||||| | |||| | || ||| |||| | || | ||||| | ||| |||| Sbjct 38454 GCCCAACCCTGTTGACAAATATGTTGGCAGCCGCGTGCGCATGCGCCGGATCATGCTCGG 38513 Query 48707 CATGAGCCAGGAGACGCT-GGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAAT 48765 |||||||||||| | ||| ||| || |||||| | || || |||||||| ||||||| Sbjct 38514 CATGAGCCAGGAAAAGCTCGGCGAAGC-GCTCGGCCTGACATTTCAGCAGGTGCAGAAAT 38572 Query 48766 ACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCA 48805 |||| |||||| |||||||| ||||||| ||| ||||||| Sbjct 38573 ACGAGAAGGGCACCAACCGCATCGGCGCGAGCCGGCTGCA 38612 >seq48397 Length=242080 Score = 87.8 bits (96), Expect = 7e-13 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 48647 GCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGG 48706 ||| ||||| | |||| | |||||| ||| | || | ||||||| ||| | || Sbjct 101722 GCCCAACCCTGTTGACAAATATGTCGGCAGTCGCGTGCGCATGCGCCGCATCATGTTGGG 101781 Query 48707 CATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATA 48766 |||||| ||||| | ||| | || | | ||| | || ||||||||| | |||||||| Sbjct 101782 CATGAGTCAGGAAAAGCTCGGTGAAGCTTTGGGCCTGACTTTCCAGCAGATTCAGAAATA 101841 Query 48767 CGAAAAGGGCGCCAACCGCGTCGGCGCCAGC 48797 ||| |||||| | ||||| |||||||| ||| Sbjct 101842 CGAGAAGGGCACGAACCGGGTCGGCGCGAGC 101872 >seq53101 Length=121849 Score = 80.6 bits (88), Expect = 1e-10 Identities = 156/226 (69%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 22347 ATCAGCTCGGGCACGTTCACGAACTTCGCGAAGCGGCTGTTGAGCTTGTACTGTCCCGAC 22406 ||||||||||| ||||| ||||| ||||||||||| | | ||||||| | ||||| Sbjct 47995 ATCAGCTCGGGAACGTTGACGAAGGTCGCGAAGCGGGAGACGGGCTTGTATTTACCCGAT 47936 Query 22407 GGCGACAGCTCCCAATCCGTCACCACCTCGCCGAACACCTTCGCCCAAGCGTCAAAGTGC 22466 ||| ||| || || ||| || || ||||| | |||||| ||||| || | | Sbjct 47935 GGCTGCAGTTCGAGCTCGGTCGAGACGTCACCGAAGGTCGACGCCCAGGCGTCGAA-TTC 47877 Query 22467 GAGATGCCGAGATCACGC---AGCATGGGCTCGT---CGAGGTAGCGCATGACCGTGAAC 22520 | ||| || ||||| |||| | | | | |||| ||||| ||||| |||| Sbjct 47876 G---TGC--AGGCCACGCTCGAGCAATGCCACATATCCGAGATAGCGTTGGACCGAGAAC 47822 Query 22521 ATTTCGGCCATGGTGTTGCTCAACGGGGTACCGGTGAGGAACACGA 22566 || ||| | | ||||||| | | |||||| |||| | || ||||| Sbjct 47821 ATCTCGCCGAGGGTGTTGGTGATCGGGGTGCCGGAGGCGAGCACGA 47776 >seq24986 Length=52538 Score = 80.6 bits (88), Expect = 1e-10 Identities = 159/234 (68%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 21493 CATAGAGCTCGTTGCCCTGCCGGATGCCGCGCCCGTCGCGTTGCTCAAGGTCGGACGGCC 21552 ||| | ||| |||||||||||| | | ||| || ||||| ||||| | | |||||| Sbjct 14192 CATCGTGCTGGTTGCCCTGCCGCACGATGCGGCCCTCGCGCTGCTCGATTTGCGACGGCA 14251 Query 21553 GCCACGGCGCATCGATGTGATGCAGCGCGACGAGGCGGTTTTGGACGTTGGTACCGGCGC 21612 |||| || | |||| ||||||||| || ||| || || | || ||||| | Sbjct 14252 GCCAGGGGACGTCGAGGTGATGCAGGGCCTTGAGTCGCAACTGCGCATTCACACCGGTCC 14311 Query 21613 CCATCTTCGGCGTCGAGCCGAACAGGAACCGGACCCGTCCGGACCTGACCTTTCCGAATA 21672 ||||| | | |||||||| |||||| |||||| ||||| | || | ||||| | Sbjct 14312 CCATCGTGTCGGACGAGCCGATCAGGAAGCGGACCTTTCCGGCACGCACGTCGCCGAAGA 14371 Query 21673 GCTCTTCCTTCTGCGCCTGCG---TGTTGGCGTCATGGATGAAGGCAATCTCGG 21723 | || || ||||| | | ||| ||| || |||||||| ||||||| Sbjct 14372 G---GCGCTGCTTCGCCTCGGATTTCTTGTAGTCCTGCATGAAGGCGATCTCGG 14422 >seq24077 Length=225776 Score = 80.6 bits (88), Expect = 1e-10 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 48735 CTCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGC 48793 ||||| ||| |||||| ||||||||||||||||||||||||| ||| ||||||||||| Sbjct 97321 CTCGGAGTCAGCTTCCAACAGGTCCAGAAATACGAAAAGGGCGTCAATCGCGTCGGCGC 97263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183485881785912