Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq47808 163 4e-35 seq47532 163 4e-35 seq38762 163 4e-35 seq38761 163 4e-35 >seq47808 Length=3094 Score = 163 bits (180), Expect = 4e-35 Identities = 377/560 (67%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 450 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 509 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 510 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 568 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGTCAT- 50134 ||| || || || |||||||| | | || | ||| | | | | ||| || | Sbjct 569 GATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTT 628 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 629 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 688 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || ||||| ||| || || || || ||||| | || || Sbjct 689 GCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 748 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| ||||| || |||||||| || | ||||||| Sbjct 749 CATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 808 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | || || | || | || ||| ||| || ||||| ||||| Sbjct 809 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGC 868 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || |||| || || || || || || | ||| | | |||| || | || Sbjct 869 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGATTCCC 927 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | | || || || | | ||| |||||||| | ||||| || || ||||| |||| Sbjct 928 AGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCT 987 Query 50492 TTTTATACATATTCCAGATG 50511 | || ||||| | ||||||| Sbjct 988 TCTTGTACATCTCCCAGATG 1007 >seq47532 Length=3156 Score = 163 bits (180), Expect = 4e-35 Identities = 377/560 (67%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 2707 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2648 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 2647 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2589 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGTCAT- 50134 ||| || || || |||||||| | | || | ||| | | | | ||| || | Sbjct 2588 GATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTT 2529 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 2528 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 2469 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || ||||| ||| || || || || ||||| | || || Sbjct 2468 GCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 2409 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| ||||| || |||||||| || | ||||||| Sbjct 2408 CATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 2349 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | || || | || | || ||| ||| || ||||| ||||| Sbjct 2348 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGC 2289 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || |||| || || || || || || | ||| | | |||| || | || Sbjct 2288 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGATTCCC 2230 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | | || || || | | ||| |||||||| | ||||| || || ||||| |||| Sbjct 2229 AGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCT 2170 Query 50492 TTTTATACATATTCCAGATG 50511 | || ||||| | ||||||| Sbjct 2169 TCTTGTACATCTCCCAGATG 2150 >seq38762 Length=2104 Score = 163 bits (180), Expect = 4e-35 Identities = 377/560 (67%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 1281 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1340 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 1341 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1399 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGTCAT- 50134 ||| || || || |||||||| | | || | ||| | | | | ||| || | Sbjct 1400 GATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTT 1459 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1460 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 1519 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || ||||| ||| || || || || ||||| | || || Sbjct 1520 GCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 1579 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| ||||| || |||||||| || | ||||||| Sbjct 1580 CATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 1639 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | || || | || | || ||| ||| || ||||| ||||| Sbjct 1640 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGC 1699 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || |||| || || || || || || | ||| | | |||| || | || Sbjct 1700 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGATTCCC 1758 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | | || || || | | ||| |||||||| | ||||| || || ||||| |||| Sbjct 1759 AGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCT 1818 Query 50492 TTTTATACATATTCCAGATG 50511 | || ||||| | ||||||| Sbjct 1819 TCTTGTACATCTCCCAGATG 1838 >seq38761 Length=2091 Score = 163 bits (180), Expect = 4e-35 Identities = 377/560 (67%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 1268 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1327 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 1328 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1386 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGTCAT- 50134 ||| || || || |||||||| | | || | ||| | | | | ||| || | Sbjct 1387 GATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTT 1446 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1447 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 1506 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || ||||| ||| || || || || ||||| | || || Sbjct 1507 GCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 1566 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| ||||| || |||||||| || | ||||||| Sbjct 1567 CATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 1626 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | || || | || | || ||| ||| || ||||| ||||| Sbjct 1627 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGC 1686 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || |||| || || || || || || | ||| | | |||| || | || Sbjct 1687 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGATTCCC 1745 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | | || || || | | ||| |||||||| | ||||| || || ||||| |||| Sbjct 1746 AGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCT 1805 Query 50492 TTTTATACATATTCCAGATG 50511 | || ||||| | ||||||| Sbjct 1806 TCTTGTACATCTCCCAGATG 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717759349896880