Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq55903 89.7 5e-13 seq55485 84.2 2e-11 seq54362 84.2 2e-11 seq43114 82.4 8e-11 >seq55903 Length=2024 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| || | |||| ||| ||||| || Sbjct 504 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGC 563 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| |||| || || ||||| |||||||| ||||| || ||||| || || Sbjct 564 TTACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 623 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || || | | || | |||||||| | || || || | || | |||||||||||| Sbjct 624 TGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTC 683 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| || |||||| Sbjct 684 AGGGTCTTGACGAAGATCTGCATA 707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || || || Sbjct 282 GTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 341 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||||||||| ||||| || ||||| || || || || Sbjct 342 GCGAAGATAAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 401 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| ||| || || || | || | ||||||||||||| || Sbjct 402 ACGTTCTCGATGGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 461 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 462 TTGACGAAGATCTGCATA 479 >seq55485 Length=2888 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| || || || |||||| Sbjct 35 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCAAGCTGCTTACCA 94 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| |||||||| || || || ||||| || ||||| || Sbjct 95 GCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTTTGCTTG 154 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| ||| || || || | || | ||||||||||| | || Sbjct 155 ACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 214 Query 143168 TTTACGAATATTTGCATAG 143186 || ||||| || ||||||| Sbjct 215 TTCACGAAGATCTGCATAG 233 >seq54362 Length=8978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||||| || || || || || ||||||||||| | |||| | Sbjct 4344 CGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTGCGGCCG 4403 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || ||||| || |||||||| |||| || || ||||| |||||||| ||||| || ||| Sbjct 4404 TCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTG 4463 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || || | | || | |||||| | | || || || | ||| | Sbjct 4464 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGAGTAATT 4523 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || || | || || ||||| || |||||| Sbjct 4524 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATA 4559 >seq43114 Length=1161 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || |||||| Sbjct 937 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 996 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| ||||| || ||||| || ||||| || || || || Sbjct 997 GCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTG 1056 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || || | || | |||||||||||| | || Sbjct 1057 ACGTTCTCAATGGTGTCGCTCGACTCGACCTCGAGGGTGATCGTCTTGCCGGTAAGAGTC 1116 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 1117 TTGACGAAGATCTGCATA 1134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506654787361440