Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_004687.1 Length=156102 Score E Sequences producing significant alignments: (Bits) Value seq32030 96.9 3e-15 seq54433 82.4 8e-11 >seq32030 Length=166927 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/163 (75%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 116599 CCAAGCCCTGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACG 116658 ||||| | | || || ||| |||||||| ||||||| || |||||||||||| | | | Sbjct 85870 CCAAGGCATTCCCGT-CGGGCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTCGCGTGGG 85928 Query 116659 TCATGGGCATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCA 116718 || ||||||| |||| |||||||||| || |||| ||||||||||||| ||| Sbjct 85929 CGCTGACCATCACCGACCTCGATCCGATCAAGTTCGGCCTGCTGTTCGAGCGCTTCCTCA 85988 Query 116719 A-CCCGGAC-CGCCCCGACTTCCCCGACATCGACGTCGACTTC 116759 | |||| || || | ||| | || ||| ||||| |||| ||| Sbjct 85989 ATCCCGAACGCGTCTCGA--TGCCGGACTTCGACATCGATTTC 86029 >seq54433 Length=385573 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116654 CTACGTCATGGGCATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTT 116713 |||||| | ||| |||||||| |||| |||| |||| ||| ||| ||||||||||||| Sbjct 275671 CTACGTGCTCGGCGTCACCTCGGTCGATCCGACCAAGGTCGATCTGCTGTTCGAGCGCTT 275612 Query 116714 TATCAACCCGGACCGCCCCGACTTCCCCGACATCGACGTCGACTTCCAGAAGTCG 116768 ||| | ||| || | || ||||||||||||||||| ||| || | ||| Sbjct 275611 CATCTCCAAGGAGCGGCTGGAGCCGCCCGACATCGACGTCGATTTCGAGCATTCG 275557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499044189199840