Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq55630 107 2e-18 seq53697 107 2e-18 seq45692 89.7 4e-13 >seq55630 Length=2319 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | | ||||| ||||||| || | | Sbjct 54 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCCTCGGGTCCGCCGTGCTTCTTGC- 112 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 113 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 172 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 173 GGACGTGGAAGCCGTG 188 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | | ||||| ||||||| || | | Sbjct 703 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCCTCGGGTCCGCCGTGCTTCTTGC- 761 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 762 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 821 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 822 GGACGTGGAAGCCGTG 837 >seq53697 Length=5429 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | | ||||| ||||||| || | | Sbjct 5140 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCCTCGGGTCCGCCGTGCTTCTTGC- 5198 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 5199 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 5258 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 5259 GGACGTGGAAGCCGTG 5274 >seq45692 Length=9336 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| ||||||||||| || |||| || | ||||||| ||||| || || Sbjct 4895 GTGGACTCCTTCTGAATATTGTAGTCAGCCAGCGTACGGCCGTCCTCGAGCTGCTTGCCG 4954 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | ||||||||| ||| | |||||| ||||| || ||||| || Sbjct 4955 GCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 5014 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || |||| | ||| |||| ||| ||||| || || || | || Sbjct 5015 ACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTC 5074 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 5075 TTGACGAAGATCTGCAT 5091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414286105030348