Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq53101 392 1e-104 seq24987 248 4e-61 seq24986 158 5e-34 seq47259 123 1e-23 >seq53101 Length=121849 Score = 392 bits (434), Expect = 1e-104 Identities = 1385/2104 (66%), Gaps = 143/2104 (7%) Strand=Plus/Plus Query 54883 CGATGGATTTGGACCGACACGCAGCGCGCCGACCGGCTCGTCAACTACTACAACGAGAAC 54942 || ||||| ||| ||||| | | ||| ||||||| || | | ||||||||| | Sbjct 46959 CGCTGGATCTGGTCCGACCCCGATCGCACCGACCGCCTGGCGCGCGTCTACAACGACCGC 47018 Query 54943 TTCAACAACATCGCGCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCG----T 54998 |||||||||||||| || ||| ||||| || ||||| |||| ||| || |||| | Sbjct 47019 TTCAACAACATCGCCCCACGCGCCTTCGATGGATCGCATCTGAAGCTACCCGGCGCCTCT 47078 Query 54999 GTCGC---TGCGCTTCAACCTGCGCGAAAACCAGAAGCGCGCCATCTGGCGCGGCATTCA 55055 | ||| || ||| | || || | ||||| || | |||||||||| ||| Sbjct 47079 GGCGCCTTTGTTCTTTA---TGGGC----ATCAGAAACGTGGCATCTGGCGCATCATCTC 47131 Query 55056 GGAAGG--CGACATGTACCTCGCGCACGCGGTCGGCGCGGGCAAGACGTTCACGATGATC 55113 || || |||| | | ||||||||||| |||||||| |||||||| | |||||| Sbjct 47132 GGCGGGTTCGACCTAT--CTCGCGCACGCTGTCGGCGCCGGCAAGACCATGACGATGGCG 47189 Query 55114 GCGACGGGCATGGAGGAGCGCCGGCTGGGCCTCTCCAACAAGCCGATGTACGTGGTGCCG 55173 || ||| |||||| |||||||||| ||||| | |||| ||||| ||| || || Sbjct 47190 GCCGCGGTGATGGAGCAGCGCCGGCTCGGCCTGATCGCCAAGGCGATGATCGTCGTTCCC 47249 Query 55174 AACCACATGCTCGCGCAGTTCGCACGCGAATTCCTCGAGCTCTACCCGGCCGCGAACATC 55233 |||| || |||||| || |||||||| |||| |||||| ||| |||| ||| Sbjct 47250 GGCCACTGCCTGGCGCAGGCGGCGCGCGAATTTCTCGCGCTCTATCCGAACGCGCGGATC 47309 Query 55234 ATGGTCGCGGACGAGCAGAATTTCCACACGCACAACCGCCGTCGCTTC--GTCGCGCAGG 55291 |||||||||||||| |||||| || | |||| || | ||||||| ||||||| | Sbjct 47310 CTGGTCGCGGACGAGACCAATTTCAGCAAGGACAAGCGGCATCGCTTCCTGTCGCGCGCG 47369 Query 55292 CCGCGCTCAACAATCCGGATGCGGTCATCATCACGCACTCGGCGTTCGGCCGCATCGGCA 55351 || | | || | ||||||| |||||||||| || || || ||| || |||| Sbjct 47370 GCGACCGCGAC--TTGGGATGCGATCATCATCACCCATTCAGCTTTCCGCTTCATCTCGG 47427 Query 55352 TGTCCGACGAGTACGCGGCGCAGTTCATCTCCGACCAGATCGACGAG-TGGAAAGCCGCG 55410 || || | || || | ||| | ||| ||| |||||| |||| | Sbjct 47428 TGCCCTCGGCGTTCGAGCAACAGATGATC------CAG---GACGAGCTGGA-------G 47471 Query 55411 CTCGACGAGACG-----GAC--AAG-----AGCGAC---CGGATCACGCGCAAGCAGATC 55455 ||| |||||||| ||| ||| |||||| || || ||||||||| | || Sbjct 47472 CTCTACGAGACGCTGCTGACCAAAGTCGAAAGCGACGATCGCGTCTCGCGCAAGCGGCTC 47531 Query 55456 GAGCGCCGCATCGNNNNNNNNNNNNNNNNNNNNNNNGCGAAACAGGGCAG-CGAGAAG-A 55513 || | | || | |||| | || | ||| | | Sbjct 47532 GAAAGGCTCAAGGAGGGCCTGAAAGAGCGGCT-----CGAAGC---GCTGTCGACTCGCA 47583 Query 55514 AGGACAAGGTGCTGTCGTTCGAGGAGCTGGGCGTCGACCGTCTGTTCGTCGACGAATTCC 55573 |||| | |||| | || ||| ||||| |||||| | |||||||||| | Sbjct 47584 AGGATGACCTGCTCACCATCTCCGAGATGGGCATCGACCAGATCATCGTCGACGAGGCGC 47643 Query 55574 ACGAGTTCCGCAAACTCGACTTCGCGACGCAGCAGAGCAACATC-AAGGGCATCGACCCG 55632 | ||||||||||||||| ||| ||||| || | | || | |||||| |||| ||| Sbjct 47644 AGGAGTTCCGCAAACTCTCCTTTGCGAC-CAATATGTCGACGTTGAAGGGCGTCGATCCG 47702 Query 55633 GCCGGCTCGCAGCGCGCGATGGACCTGTTCATGAAGGTCCAATACCTGCGCAGCAAGAAG 55692 |||||||||||||||| ||| |||||| | ||| | ||| | || ||||| Sbjct 47703 AACGGCTCGCAGCGCGCGTGGGATCTGTTCGTCAAGTCGCGCTACGTCGACATGAAGAAC 47762 Query 55693 CCGGGCCGCGCGCTCGTGGCCGCGTCCGGCACGCCGGTCACGAACACGATGGGCGAGCTC 55752 |||||||| ||||||||| ||| |||||||| ||| |||| ||||| | |||||| | Sbjct 47763 CCGGGCCGTGCGCTCGTGCTCGCCTCCGGCACCCCGATCACCAACACCCTCGGCGAGATG 47822 Query 55753 TACACCGCGCAACGCT-TCTTCCAGCCCGAGCAGCTTGCA-GAGGATGGTCTGGATACGT 55810 | | | | ||||||| ||| | ||| |||| ||| ||| ||| | | Sbjct 47823 TTCTCGGTCCAACGCTATCTCGGATATGTGGCA--TTGCTCGAGCGTGGCCTGCACGAAT 47880 Query 55811 TCGACGCGTGGGC--CAACCAGTACGGCGACATCGTTG--CGGGCTTCGAGCAGAACGCC 55866 ||||||| ||||| | ||| | ||| ||| || | | || ||| ||| | | | | Sbjct 47881 TCGACGCCTGGGCGTCGACC--TTCGGTGACGTC-TCGACCGAGCT-CGAACTGCAGCCA 47936 Query 55867 GCCGGCGGCTACGAGGTCGTGAGCCGCTTCGCGAAGTTCCAGAACGTGCCCGAGCTGATG 55926 | || ||| || ||| ||||||||||| ||| ||||| ||||||||||| Sbjct 47937 TCGGGTAAATACAAGCCCGTCTCCCGCTTCGCGACCTTCGTCAACGTTCCCGAGCTGAT- 47995 Query 55927 CGCCGCGTGC-GCTCGTTCATGGACATCCTGACGAGCCAACAGCTCGCGC-AGTACGTCG 55984 ||| || | |||| || ||| || ||| | | | | | |||| ||||||| | Sbjct 47996 CGCGATGTTCCGCTCCATCGCCGACGTCGTGATGCCCGAGGATTT-GCGCCAGTACGT-G 48053 Query 55985 ACCGT-CCGGCGATCGAGGGCGGCGGCCGTCAGATCATGGTCACGCCGGAGCCGTTCG-- 56041 | || ||||||||| | |||| | || |||||| | ||| | |||||| || Sbjct 48054 AAGGTGCCGGCGATCTCGACCGGCAGACGGCAGATCCT---CACAGCAAAGCCGTCCGCT 48110 Query 56042 GC-TACAAGGCATACCAGAAGGCGCTCGAGCAGCGCATCACCGCGATCCGCAACCGCAAG 56100 || | |||| ||||||| | ||||| ||||||||| |||||| | ||| | Sbjct 48111 GCATTCAAGCGTTACCAGACGCTGCTCGGCGAGCGCATCAAGGCGATCGAGGAGCGCGAC 48170 Query 56101 GGCCCGCCGCAGAAGGGGCAGGACATCATCCTGAACGTGATCGCGGACGGCCGTTTCTCG 56160 | |||| || || | |||||| || || || ||| | || ||||| | || Sbjct 48171 CGTGCGCCCGAGCCCGGCGACGACATCCTCTTGTCGGTCATCACCGATGGCCGCCACGCG 48230 Query 56161 GCGATCGACATGCGTTTCGTCGA-CCCGACCGCGCCGAGCGACCCGAACAGCAAGCTGAA 56219 ||||||||| |||| | ||||| |||||| | | | ||| | ||| ||||||||| Sbjct 48231 GCGATCGACCTGCGCCTGGTCGATCCCGACAATGACAA-CGAGGCCGACAACAAGCTGAA 48289 Query 56220 CCAGATGATCG---ACGCCGTG---ATC---GCCGACTACCATGCGGCATCCGACTACCA 56270 |||| | ||| ||||| | ||| | ||| ||| ||| | | ||| Sbjct 48290 CCAGCTCGTCGGCAACGCCTTCCGCATCTGGGGCGA-TAC--TGCCGAGCGCACCTAT-- 48344 Query 56271 GTACACGACGAACGGCAAGG---TCGACCCGATCAAGGGCGCGTCGCACATCATCTTCAC 56327 || | | ||| ||||||| |||| | | | |||||| |||| || |||||| | Sbjct 48345 GTTCGCACCGA-CGGCAAGCCGTTCGAACTGCCC---GGCGCGGCGCAGATGATCTTCTC 48400 Query 56328 GGACATCGGGCTCGGCGAGCAGTCGGCGAAGAACCGCGGCTTC--GACATGAAGGCGTGG 56385 |||| |||| | | ||| |||| |||| ||||||||| | | | | || ||| Sbjct 48401 GGACCTCGGCACCATC-AGC-GTCGA-GAAGTCGCGCGGCTTCTCGGCCT-ATCGC-TGG 48455 Query 56386 AT-CGAAAAGCGTCTGGTCGAGGGCGGCGTGCCCCGCGAGC-AGATCGCGTTCATGCGCG 56443 || || | | | || ||| |||||||| || | | ||||| ||||||| | Sbjct 48456 ATTCGCGACGAG-CTCGTCCGCATGGGCGTGCCG-GCATCCGAAATCGCCTTCATGCAGG 48513 Query 56444 A---CAACAAGGAGCACGCGAAGAAAGAGCGTCTTTTCGCCGACATGCGCGAGGGCAAAA 56500 | ||| ||| | | |||||| | ||| || |||| |||| |||||| ||||| Sbjct 48514 ATTTCAAGAAGTCGGAGGCGAAGCA---GCGCCTGTTCGGCGACGTGCGCGCCGGCAAGG 48570 Query 56501 AGCGCGTGCTGATCGGCGGCAAGGACA---TGGAAACCGGCGTCAACGTGCAGAAGCGCC 56557 ||| | |||||||| || ||||| ||| ||||||||||||| |||| ||||| Sbjct 48571 TCCGCTTCCTGATCGGGAGCTCGGACACGATGGGGACCGGCGTCAACGCGCAGCTGCGCC 48630 Query 56558 TCTACAGCGAGGAGCATCTGGACGCGCCGTGGTTCCCGGCATCCGTCGAGCAGCGCGAGG 56617 || | | | | || || |||| ||||||| | ||| | ||||||||||||||| Sbjct 48631 TCAAGGCCTTGCATCACCTCGACGTGCCGTGGCTGCCGTCGCAGATCGAGCAGCGCGAGG 48690 Query 56618 GGCGCATCATCCGCCAGGGCAACCAGAACAAGCAGGTGCGCATCCGCGCGTGGGCGACGA 56677 | |||||| | ||||||||||||||| || | |||| ||| ||| | ||||| Sbjct 48691 GCCGCATCGTGCGCCAGGGCAACCAGCACGACGAGGTCGATATCTTCGCCTATGCGACCG 48750 Query 56678 AGGGC-AGCTACGACTCGACCATGTGGGGGATGAACGCCCGCAAGGCTCGCTTCATCGAA 56736 ||||| ||| ||| || |||||| || |||| |||||||| |||||||||| Sbjct 48751 AGGGCTCGCT-CGATGCGCAGATGTGGCAGAACAACGAGCGCAAGGCCCGCTTCATCGCC 48809 Query 56737 CAGGCCCTCAACGGCGACGACAGCG-TGCGCTCGCTGGAGGACGTGTCCGAGGCGTCGGC 56795 ||| || ||||||| || || | ||| ||| |||||| || |||| ||| Sbjct 48810 GCGGCTCTTTCCGGCGAC-ACTTCGATCCGCAGGCTCGAGGACATGGGCGAGAGCCAGGC 48868 Query 56796 ------GTTCGACATGGCCGCCGCGCTGGCGTCGGGCGACGAGCGCTACATGAAGCTGGC 56849 ||||| |||||| ||| | |||||||| ||| ||| ||| || ||| Sbjct 48869 CAACCAGTTCGCGATGGCCAAGGCGATCGCGTCGGGTGACCCGCGGCTGATGCAGAAGGC 48928 Query 56850 CGGCCTGAAGGCCGACGTCGAGCGGCTGGAGCGCCTGAGCTACGCGCACCACGACGACCA 56909 ||| || |||||||| ||| |||||| || |||||| || ||| || ||| || || Sbjct 48929 CGGGCTCGAGGCCGACATCGCGCGGCTCGAACGCCTGCGCGCCGCCCATATCGATGATCA 48988 Query 56910 GAAC 56913 | || Sbjct 48989 GCAC 48992 Score = 84.2 bits (92), Expect = 9e-12 Identities = 181/260 (70%), Gaps = 17/260 (7%) Strand=Plus/Plus Query 54379 GACGTCATCGACGCGCTCGGCACCTCGATCTACGAGGACCCGGCGAAGGGCT---GGCAG 54435 || ||| ||| || |||||||| | |||||| | || ||||| | || | ||||| Sbjct 46428 GATGTCGTCGCCGAGCTCGGCAGCGCGATCTTCCGCGATCCGGCTGACGGTTCATGGCAG 46487 Query 54436 ACGTCCGACGCGTACCTGTCGGGCAACGTCGTGCG-CAAGCTCG---CGG-AGGCGCAGG 54490 ||| | ||||| || ||||| ||| ||| | ||| ||||||| ||| || || || Sbjct 46488 ACGGCGGACGCCTATCTGTCAGGCCCCGT-GCGCGACAAGCTCAAAACGGCAGAAGC-GG 46545 Query 54491 CCGCCGCGCGCGCCGACCGGAAGTATCAGCGCAACGTCGAGGCGCTGCTCGCGGTGCAGC 54550 | ||||| | || || | || ||| ||||||| ||| ||||||| | || |||| Sbjct 46546 CGGCCGCACTCGACG--CAGA-GTACGAGCGCAATGTCACTGCGCTGCAAGGCGTCCAGC 46602 Query 54551 CGAAGCCG--CTGGGCCCGACCGACATCACGGTGAAGCTGGGCCAGAATTGGATTCCGGC 54608 | |||| || ||||| |||||||||||| | ||| ||| | ||||| ||||| Sbjct 46603 CC--GCCGATCTCAGCCCGTCCGACATCACGGCGCGGCTCGGCGCGCCATGGATCCCGGC 46660 Query 54609 CAGCGACGTCGCCGCGTTCG 54628 | ||| ||| ||| |||| Sbjct 46661 CGCCGATATCGTCGCTTTCG 46680 >seq24987 Length=52459 Score = 248 bits (274), Expect = 4e-61 Identities = 1304/2029 (64%), Gaps = 93/2029 (5%) Strand=Plus/Plus Query 54930 CTACAACGAGAACTTCAACAACATCGCGCCGCGCCAGTTCGACGGCTCGCACCTGACGCT 54989 ||||||||| |||||||||||||||||| || |||||||| || || |||| ||| Sbjct 48446 CTACAACGACCGCTTCAACAACATCGCGCCTCGTGCCTTCGACGGGTCCCATCTGAAGCT 48505 Query 54990 GCCGGGCGTGTCGCTGCGCTTCAAC-CTGCGCGAAAACCAGAAGCGCGCCATCTGGCGCG 55048 ||||||| || |||| | || || | |||||||||||| |||||||||| Sbjct 48506 CCCGGGCGCCTCTG-GCGCCTTTACTCTTTATGGGCACCAGAAGCGCGGCATCTGGCGCA 48564 Query 55049 GCATTCAGGAAGGCGACATGTACCTCGCGCACGCGGTCGGCGCGGGCAAGACGTTCACGA 55108 | | || ||| | || ||||| |||||||||||||| |||||||| | || | Sbjct 48565 TCGTCTCGGCGGGCTCGACCTATCTCGCCCACGCGGTCGGCGCTGGCAAGACCATGACCA 48624 Query 55109 TGATCGCGACGGGCATGGAGGAGCGCCGGCTGGGCCTCTCCAACAAGCCGATGTACGTGG 55168 || || | ||||||| ||||| |||| ||||| | |||| ||||| || | Sbjct 48625 TGGCGGCCGCCATCATGGAGCAGCGCAGGCTCGGCCTGATCGCCAAGGCGATGCTGGTCG 48684 Query 55169 TGCCGAACCACATGCTCGCGCAGTTCGCACGCGAATTCCTCGAGCTCTACCCGGCCGCGA 55228 |||| ||| || |||||| || ||||| ||||| | |||||| ||| |||| Sbjct 48685 TGCCCGGCCATTGCCTGGCGCAGGCTGCCCGCGAGTTCCTGGCGCTCTATCCGAACGCGC 48744 Query 55229 ACATCATGGTCGCGGACGAGCAGAATTTCCACACGCACAACCGCCGTCGCTTCGTCGCGC 55288 ||| | ||||| |||||| |||||| || | |||| || | ||||| | ||| Sbjct 48745 GCATTCTCGTCGCCGACGAGACCAATTTCACCAAGGACAAGCGGCAGCGCTTTCTGTCGC 48804 Query 55289 AGGCCGCG--CTCAACAATCCGGATGCGGTCATCATCACGCACTCGGCGTTCGGCCGCAT 55346 ||||||| | ||| ||| ||| ||||||||||||| ||||||||| | ||| Sbjct 48805 GGGCCGCGACGGCGACA--TGGGACGCGATCATCATCACGCATTCGGCGTTCCGTTTCAT 48862 Query 55347 CGGCATGTCCGAC-GAGTACGCGGCGCAGTTCATCTCCGACCAGATCGACGAGTGGAAAG 55405 |||| || ||| | | | || | ||| | ||| ||| | | || | || Sbjct 48863 CGGCGTG-CCGTCAGCCTTCGAGCAGCAAATGATCCAGGACGAACTGGAGCTTTACGAAA 48921 Query 55406 CCGCGCTCGACGAGACGGACAAGAG-CGACCGGATCACGCGCAAGCAGATCGAGCGCCGC 55464 || ||| | || || ||| | |||||| || ||||||||| | |||| || Sbjct 48922 CCTTGCTGACCAAGGTCGA-AAGCGACGACCGTGTCTCGCGCAAGCGGCTCGAACG---- 48976 Query 55465 ATCGNNNNNNNNNNNNNNNNNNNNNNNGCGAAACAGGGCAG-CGAGAAG-AAGGACAAGG 55522 | | | ||| | || | ||| | |||||| | Sbjct 48977 GTTGAAGGAGGGCCTGAAAGAGCGGCTG-GAATC---GCTGTCGACCCGCAAGGACGATC 49032 Query 55523 TGCTGTCGTTCGAGGAGCTGGGCGTCGACCGTCTGTTCGTCGACGAATTCCACGAGTTCC 55582 | ||| | || ||| | |||||||||| | |||||||||| || |||||| Sbjct 49033 TTCTGACCATCTCCGAGATCGGCGTCGACCAGATCATCGTCGACGAGGCGCAGGAGTTCA 49092 Query 55583 GCAAACTCGACTTCGCGACGCAGCAGAGCAACATCAAGGGCATCGACCCGGCCGGCTCGC 55642 | || ||| ||||||||| | ||||| | | ||||| |||| ||| |||||||| Sbjct 49093 GGAAGCTCAGCTTCGCGACCAATATGAGCACCTTGAAGGGTGTCGATCCGAACGGCTCGC 49152 Query 55643 AGCGCGCGATGGACCTGTTCATGAAGGTCCAATACCTGCGCAGCAAGAAGCCGGGCCGCG 55702 ||||||| |||||| | ||||| | | | | | ||| || || ||||| | Sbjct 49153 AGCGCGCCTGGGACCTTTATGTGAAGTCGCGCTTCATCGAGACCAAAAACCCCGGCCGGG 49212 Query 55703 CGCTCGTGGCCGCGTCCGGCACGCCGGTCACGAACACGATGGGCGAGCTCTACACCGCGC 55762 |||| ||| ||| |||||||| ||| |||| |||||| | |||||| | | | | | || Sbjct 49213 CGCTGGTGCTCGCCTCCGGCACCCCGATCACCAACACGCTCGGCGAGATGTTCTCGGTGC 49272 Query 55763 AACGCT-TCT---TCCAGCCCGAGCAGCTTGCAGAGGATGGTCTGGATACGTTCGACGCG 55818 | |||| ||| | ||| || |||| || || ||| | || ||||| Sbjct 49273 AGCGCTATCTCGGTTACGCC---GC-GCTTCTCGATCGCGGCCTGCACGAATTTGACGCC 49328 Query 55819 TGGGCCAACCAGTACGGCGACATCGTTG--CGGGCTTCGAGCAGAACGCCG-CCGGCGGC 55875 |||||| || |||||| || | | || || |||||| | |||| ||||| Sbjct 49329 TGGGCCTCGACGTTCGGCGATGTC-TCGACCGAGC-TCGAGCTCCA-GCCGTCCGGCAAA 49385 Query 55876 TACGAGGTCGTGAGCCGCTTCGCGAAGTTCCAGAACGTGCCCGAGCTGATGCGCCGCG-T 55934 || || ||||| |||||||| | ||| || ||||| |||||||| |||| | | Sbjct 49386 TATAAGCCCGTGACGCGCTTCGCCACCTTCGTCAATGTGCCGGAGCTGAT-CGCCATGTT 49444 Query 55935 GCGCTCGTTCATGGACATCCTGACGAGCCAACAGCTCGCGCAGTACGTCGACCGT-CCGG 55993 ||||||||| |||| | ||||| | | || ||| ||||| || || || | Sbjct 49445 CCGCTCGTTCGCGGACGTGGTGACGCCGGACGACCTGCGGCAATACGT-GAAGGTGCCTG 49503 Query 55994 CGATCGAGGGCGGCGGCCGTCAGATCATGGTCACGCCGGAGCCGTTCGGCTACAAGGCAT 56053 ||||| | ||| | || |||||| || | | | | | | || || |||| | Sbjct 49504 CGATCTCGACCGGGCGGCGCCAGATCTTGACCTCCAGGCCGACCTCCGCCTTCAAGCGCT 49563 Query 56054 ACCAGAAGGCGCTCGAGCAGCGCATCACCGCGATCCGCAACCGCAAGGGCCCGCCGCAGA 56113 ||||| | |||||| ||||||||| |||||| | || | |||||||| || Sbjct 49564 ACCAGGTGCTGCTCGACGAGCGCATCAAGGCGATCGAGATGCGTGATCGCCCGCCGGAGC 49623 Query 56114 AGGGGCAGGACATCATCCTGAACGTGATCGCGGACGGCCGTTTCTCGGCGATCGACATGC 56173 || | ||||| | || ||| ||| | |||||||| |||||||||| ||| Sbjct 49624 CCGGCGACGACATTCTGCTCTCCGTCATCACCGACGGCCGCCATGCGGCGATCGATTTGC 49683 Query 56174 GTTTCGTCGA-CCCGACCGCGCCGAGCGACCCGAACAGCAAGCTGAACCAGATGATCG-- 56230 | | ||||| |||||| | | | || | | | |||||| ||| | | |||| Sbjct 49684 GCCTGGTCGATCCCGACAATGAC-AATGAGTCCGAGAACAAGCTCAACAATCTCATCGCG 49742 Query 56231 -ACGCCGT---GATC--GCCGACTACCATGCGGCATCCGACTACCAGTACACGACGAACG 56284 | ||| | ||| | | | ||| |||| | | ||| || | | || ||| Sbjct 49743 AATGCCTTCCGCATCTGGAAGGCAACC--GCGGAAAACACCTA--TGTGCGC-CCGGACG 49797 Query 56285 GCAA---GGTCGACCCGATCAAGGGCGCGTCGCACATCATCTTCACGGACATCGGGCTCG 56341 |||| | |||| | | ||||| |||| || |||||| | || || ||| || Sbjct 49798 GCAAACCGTTCGA---GCTTCCTGGCGCCGCGCAGATGATCTTCTCTGATCTC-GGCACG 49853 Query 56342 GCGAGCAGTCGGCGAAGAACCGCGGCT--TCGACATGAAGGCGTGGATC---GAAAAGCG 56396 ||| || | ||||| |||||||| ||| | | | || |||||| || ||| Sbjct 49854 ATCAGC-GT-TGAGAAGAGCCGCGGCTTCTCGGCCT-ATCGC-TGGATCCGTGACGAGCT 49909 Query 56397 TCTG-GTCGAGGGCGGCGTGCCCCGCGAGCAGATCGCGTTCATGCGCGACAACAAGGAGC 56455 | || ||| ||||| || | | | ||||| ||||||| ||| ||||| || Sbjct 49910 TGTGCGTC----TTGGCGTCCCGGCCTCGGAAATCGCCTTCATGCAGGACTACAAGAAG- 49964 Query 56456 ACGCGAAG--AAAGAGCGTCTTTTCGCCGACATGCGCGAGGGCAAAAAGCGCGTGCTGAT 56513 ||||| || |||| || |||| ||| |||||| ||||| | ||| | ||| | Sbjct 49965 -TCCGAAGCCAAGCAGCGCCTGTTCGGTGACGTGCGCGCCGGCAAGATCCGCTTCCTGGT 50023 Query 56514 CGGCGGCAAGGAC---ATGGAAACCGGCGTCAACGTGCAGAAGCGCCTCTACAGCG-AGG 56569 |||| | ||| |||| ||||| ||||| | |||| |||||| | ||| | Sbjct 50024 CGGCTCCTCCGACACGATGGGCACCGGTGTCAATGCGCAGCTGCGCCT-GAAGGCGTTGC 50082 Query 56570 AGCATCTGGACGCGCCGTGGTTCCCGGCATCCGTCGAGCAGCGCGAGGGGCGCATCATCC 56629 | || || |||| ||| ||| | ||| | |||||||||| ||||| |||||| | | Sbjct 50083 ATCACCTCGACGTGCCATGGCTGCCGTCGCAGATCGAGCAGCGTGAGGGCCGCATCGTGC 50142 Query 56630 GCCAGGGCAACCAGAACAAGCAGGTGCGCATCCGCGCGTGGGCGA-CGAAGGGCAGCTAC 56688 | |||||||| ||| || | | || ||| ||| | |||| |||||| ||| Sbjct 50143 GACAGGGCAATCAGCACGACGAAGTCGATATCTTCGCCTATGCGACCGAAGGCTCGCT-T 50201 Query 56689 GACTCGACCATGTGGGGGATGAACGCCCGCAAGGCTCGCTTCATCGAACAGGCCCTCAAC 56748 || | || |||||| || || | ||||| ||||| ||||||| ||| || Sbjct 50202 GATGCCACGATGTGGCAGAACAATGAGCGCAAAGCTCGTTTCATCGCCGCGGCGCTGTCG 50261 Query 56749 GGCGACGACAGCG-TGCGCTCGCTGGAGGACGTGTCCG------AGGCGTCGGCGTTCGA 56801 |||||| || || | || |||||| ||| || || ||||| ||||| Sbjct 50262 GGCGAC-ACCTCGATTCGTCGGCTGGAAGACCTGGGCGAAGGCCAGGCGAACCAGTTCGC 50320 Query 56802 CATGGCCGCCGCGCTGGCGTCGGGCGACGAGCGCTACATGAAGCTGGCCGGCCTGAAGGC 56861 ||||||| ||| | || || |||||| |||| ||| || |||||| | |||| Sbjct 50321 CATGGCCAAGGCGATCGCCTCAGGCGACCCGCGCCTGATGCAGAAGGCCGGATTAGAGGC 50380 Query 56862 CGACGTCGAGCGGCTGGAGCGCCTGAGCTACGCGCACCACGACGACCAG 56910 ||| ||| |||||||| || || | ||| || |||||| ||| Sbjct 50381 CGATATCGCACGGCTGGAACGTTTGCGTGCCGCCCATGTCGACGATCAG 50429 >seq24986 Length=52538 Score = 158 bits (174), Expect = 5e-34 Identities = 321/470 (68%), Gaps = 10/470 (2%) Strand=Plus/Minus Query 54883 CGATGGATTTGGACCGACACGCAGCGCGCCGACCGGCTCGTCAACTACTACAACGAGAAC 54942 || ||||| ||| |||| || | ||| |||| || | | | ||| ||||| | Sbjct 15956 CGCTGGATCTGGTCCGATCCGGATCGCACCGATCGTTTGGCGCGCGTCTATAACGACTGC 15897 Query 54943 TTCAACAACATCGCGCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCGTGTCG 55002 ||||||||||||||||| || ||||| ||||| || || | || ||||||| || Sbjct 15896 TTCAACAACATCGCGCCACGAGCCTTCGATGGCTCCCATCTAAGACTTCCGGGCGCCTCT 15837 Query 55003 CTGCGC-TTCAACCTGCGCGAAAACCAGAAGCGCGCCATCTGGCGCGGCATTCAGGAAGG 55061 |||| || ||| | ||||||| |||| |||||||||| | | || || Sbjct 15836 G-GCGCCTTTGTCCTTTATGGGCACCAGAAACGCGGCATCTGGCGCATCGTCTCGGCCGG 15778 Query 55062 --CGACATGTACCTCGCGCACGCGGTCGGCGCGGGCAAGACGTTCACGATGATCGCGACG 55119 |||| | | ||||| ||||| |||||||| |||||||| | |||||| || | Sbjct 15777 ATCGACCTAT--CTCGCCCACGCCGTCGGCGCCGGCAAGACCATGACGATGGCGGCCGCC 15720 Query 55120 GGCATGGAGGAGCGCCGGCTGGGCCTCTCCAACAAGCCGATGTACGTGGTGCCGAACCAC 55179 | |||||| |||||||||| || || | |||| ||||| ||| ||||| ||| Sbjct 15719 GTCATGGAACAGCGCCGGCTCGGGCTGATCGCCAAGGCGATGCTCGTTGTGCCCGGCCAT 15660 Query 55180 ATGCTCGCGCAGTTCGCACGCGAATTCCTCGAGCTCTACCCGGCCGCGAACATCATGGTC 55239 || |||||| || |||||||| |||| |||||| ||| |||| || ||||| Sbjct 15659 TGCCTTGCGCAGGCGGCGCGCGAATTTCTCGCGCTCTATCCGAACGCGCGGATACTGGTC 15600 Query 55240 GCGGACGAGCAGAATTTCCACACGCACAACCGCCGTCGCTTC--GTCGCGCAGGCCGCGC 55297 ||||||||| |||||| | | |||| || | |||||| ||||||| || ||| Sbjct 15599 GCGGACGAGACCAATTTCACGAAGGACAAGCGACACCGCTTCCTGTCGCGC--GCGGCGA 15542 Query 55298 TCAACAATCCGGATGCGGTCATCATCACGCACTCGGCGTTCGGCCGCATC 55347 | | ||| ||| |||| ||||| || ||||| ||| || |||| Sbjct 15541 CCGCGACGTGGGACGCGATCATTATCACCCATTCGGCCTTCCGCTTCATC 15492 Score = 156 bits (172), Expect = 2e-33 Identities = 908/1413 (64%), Gaps = 67/1413 (5%) Strand=Plus/Minus Query 55536 GGAGCTGGGCGTCGACCGTCTGTTCGTCGACGAATTCCACGAGTTCCGCAAACTCGACTT 55595 |||| | |||||||||| | ||||||||||| || ||||| || || || ||| Sbjct 15309 GGAGATCGGCGTCGACCAGATCATCGTCGACGAAGCGCAGGAGTTTCGTAAGCTTTCCTT 15250 Query 55596 CGCGACGCAGCAGAGCAACATCAAGGGCATCGACCCGGCCGGCTCGCAGCGCGCGATGGA 55655 ||| ||| | | | | |||||| |||| ||| ||| ||||||||||| ||| Sbjct 15249 CGCCACGAATATGTCGACGCTGAAGGGCGTCGATCCGAACGGTTCGCAGCGCGCCTGGGA 15190 Query 55656 CCTGTTCATGAAGGTCCAATACCTGCGCAGCAAGAAGCCGGGCCGCGCGCTCGTGGCCGC 55715 ||||| | || || | | | || || || ||||| |||||||| ||| ||| Sbjct 15189 TTTGTTCGTCAAATCCCGTTTCATCGACATGAAAAATCCGGGTCGCGCGCTGGTGCTCGC 15130 Query 55716 GTCCGGCACGCCGGTCACGAACACGATGGGCGAGCTCTACACCGCGCAACGCT-TCTTCC 55774 |||||||| ||| | |||||||| | |||||| | | | | | || |||| ||| | Sbjct 15129 CTCCGGCACACCGATTACGAACACACTCGGCGAGATGTTCTCGGTCCAGCGCTATCT--C 15072 Query 55775 AGCC-CGAGCAGCTTGCAGAGGATGGTCTGGATACGTTCGACGCGTGGGCCA--ACCAGT 55831 || || | ||| ||| |||||| | ||||||||| |||||| ||| | Sbjct 15071 GGCTACGCGGCGCTCAGCGAGCGCGGTCTGCACGAGTTCGACGCCTGGGCCTCGACC--T 15014 Query 55832 ACGGCGACATCGTTGCGGGCTTCGAGCAGAACGCCGCCGG-CGGCTACGAGGTCGTGAGC 55890 ||||||| || | | |||| | | |||| ||| | ||| || || | Sbjct 15013 TCGGCGACGTCTCGACCGAACTCGAACTCCA-GCCGTCGGGCAAATACAAGCCGGTCACG 14955 Query 55891 CGCTTCGCGAAGTTCCAGAACGTGCCCGAGCTGATGCGCCGCGTGC-GCTCGTTCATGGA 55949 |||||||||| ||| |||||||||||| |||| ||| || | | || ||| || Sbjct 14954 CGCTTCGCGACCTTCGTCAACGTGCCCGAGTTGAT-CGCGATGTTCCGATCTTTCGCAGA 14896 Query 55950 CATCCTGACGAGCCAACAGCTCGCGC-AGTACGTCGACCGT-CCGGCGATCGAGGGCGGC 56007 | || | | | | | || |||| | || || || || ||||||||| | || Sbjct 14895 CGTCGTCATGCCCGGGGACCT-GCGCCAATATGT-GAAGGTGCCGGCGATCTCGACTCGC 14838 Query 56008 GGCCGTCAGATCATGGTCACGCCGGAGCCGTTCGGC----TACAAGGCATACCAGAAGGC 56063 || |||||| | ||| || |||||| |||| | |||| || |||| | Sbjct 14837 AAGCGGCAGATCCT---CACCGCGAAGCCGT-CGGCCGCGTTCAAGCGCTATCAGACGCT 14782 Query 56064 GCTCGAGCAGCGCATCACCGCGATCCGCAACCGCAAGGGCCCGCCGCAGAAGGGGCAGGA 56123 ||| | |||| |||| |||||| | || | | | ||| || || | || Sbjct 14781 GCTTGGCGAGCGGATCAAGGCGATCGAGGAGCGTGATCGTGCACCGGAGCCCGGCGACGA 14722 Query 56124 CATCATCCTGAACGTGATCGCGGACGGCCGTTTCTCGGCGATCGACATGCGTTTCGTCGA 56183 |||| | || || ||| | |||||||| | ||||||||||| |||| | ||||| Sbjct 14721 CATCCTGCTCTCGGTCATCACCGACGGCCGCCACGCGGCGATCGACCTGCGCCTGGTCGA 14662 Query 56184 CCCG-ACCGCGCCGAGCGACCCGAACAGCAAGCTGAACCAGATGATCGACGCCGTGATCG 56242 |||| || |||| | ||| ||| ||||||||||||| | ||| | || || Sbjct 14661 CCCGGACAACGCCAA-CGAGGTCGACAACAAGCTGAACCAGCTTGTCGGCAACGGCTTCC 14603 Query 56243 CCGACT---ACCATGCGGCATCCGACTACCAGTACACGACGAACGGCAAGGTCGACCCGA 56299 | || || | ||||| || || || | || ||| | | | | ||| Sbjct 14602 GCATCTGGAACGAGACGGCA---GAGAACATCTATGTG-CGTCCGG--ATGGCAAGCCGT 14549 Query 56300 TCAAG------GGCGCGTCGCACATCATCTTCACGGACATCGGGCTCGGCGAGCAGTCGG 56353 || || || ||| |||| || ||||| ||||| |||| | | ||| |||| Sbjct 14548 TCGAGTTTCCCGGAGCGGCGCAGATGATCTTTTCGGACCTCGGCACCATC-AGC-GTCGA 14491 Query 56354 CGAAGAACCGCGGCTTC--GACATGAAGGCGTGGATC---GAAAAGCGTCTGGTCGAGGG 56408 ||| ||||||||| | | | | || |||||| || | | || | ||| | Sbjct 14490 -GAAATCGCGCGGCTTCTCGGCCT-ATCGC-TGGATCCGTGACGAAC-TC-GTTCGCATG 14436 Query 56409 CGGCGTGCCCCGCGAGC-AGATCGCGTTCATGCGCGACAACAAGGAGCACGCGAAGAAAG 56467 ||||||||| ||| | ||||||| ||||||| ||| ||||| | || | ||| Sbjct 14435 -GGCGTGCCC-GCGTCCGAGATCGCCTTCATGCAGGACTACAAGAAATCCGAGGCGAAGC 14378 Query 56468 AGCGTCTTTTCGCCGACATGCGCGAGGGCAAAAAGCGCGTGCTGATCGGCGGCAAGGACA 56527 |||| || |||| |||| |||| | || || ||| | ||||||||| |||| Sbjct 14377 AGCGCCTCTTCGGCGACGTGCGTGCCGGAAAGGTCCGCTTCCTGATCGGCTCGTCCGACA 14318 Query 56528 ---TGGAAACCGGCGTCAACGTGCAGAAGCGCCTCTACAGCGAGGAGCATCTGGACGCGC 56584 ||| ||||| || || | |||| ||| ||| | | | | || || |||| | Sbjct 14317 CGATGGGGACCGGTGTGAATGCGCAGTTGCGACTCAAGGCCCTGCATCACCTCGACGTCC 14258 Query 56585 CGTGGTTCCCGGCATCCGTCGAGCAGCGCGAGGGGCGCATCATCCGCCAGGGCAACCAGA 56644 | ||| | ||| | |||||||||||||||| |||||| | || |||||||||||| Sbjct 14257 CCTGGCTGCCGTCGCAAATCGAGCAGCGCGAGGGCCGCATCGTGCGGCAGGGCAACCAGC 14198 Query 56645 ACAAGCAGGTGCGCATCCGCGCGTGGGCGACGAAGGGCAGCTACGACTCGACCATGTGGG 56704 || | |||| ||| ||| | || || | |||||| |||| || |||||| Sbjct 14197 ACGATGAGGTCGATATCTTCGCCTATGCCACTGAAGGCAGCCTCGACGCGCAGATGTGGC 14138 Query 56705 GGATGAACGCCCGCAAGGCTCGCTTCATCGAACAGGCCCTCAACGGCGACGACAGCG-TG 56763 || || | |||||||| |||||||||| || || |||||| || || | Sbjct 14137 AGAACAATGAGCGCAAGGCCCGCTTCATCGCGGCCGCGCTGTCGGGCGAC-ACCTCGATC 14079 Query 56764 CGCTCGCTGGAGGACGTGTCCGAGGCGTCGGC------GTTCGACATGGCCGCCGCGCTG 56817 || | ||||||| || ||||| ||| ||||| ||||||| ||| | Sbjct 14078 CGACGGTTGGAGGATATGGGCGAGGGCCAGGCCAACCAGTTCGCCATGGCCAAGGCGATT 14019 Query 56818 GCGTCGGGCGACGAGCGCTACATGAAGCTGGCCGGCCTGAAGGCCGACGTCGAGCGGCTG 56877 ||||||||||||||||| |||| | || || ||| | |||||| ||| |||||| Sbjct 14018 GCGTCGGGCGACGAGCGGCTCATGCAAAAAGCAGGACTGGAAGCCGACATCGCGCGGCTC 13959 Query 56878 GAGCGCCTGAGCTACGCGCACCACGACGACCAG 56910 || || || || ||| || |||||| ||| Sbjct 13958 GAACGTCTCCGCGCCGCTCATATCGACGATCAG 13926 Score = 84.2 bits (92), Expect = 9e-12 Identities = 379/580 (65%), Gaps = 23/580 (4%) Strand=Plus/Minus Query 52939 ACGCAGTACGCGCACTACACCAGCGAGGGCGTGATCCGCTCGATCTACGACGGCCTGCGC 52998 || ||||||||||||| ||| || | | | ||| |||||| | || || | Sbjct 17942 ACCCAGTACGCGCACTTCACGCCTGAATTCATTGTTCGCGCGATCTGGGCGGGGCTTCAG 17883 Query 52999 CGCCTGGGCTTCGC-CGGCGGCAAGGTGCTCGAGCCGGGCATGGGTATCGGCCTGTTCAA 53057 || || || || || ||||||| ||||||||||| || || || | || |||| Sbjct 17882 CGGCTCGG-TTGGCGCGGCGGCCGCGTGCTCGAGCCCGGGATCGGCACGGGATTGTTTGC 17824 Query 53058 GGGGCTGATGCC--CGACAGCATGGCCGCGACCAGCCAGTACACGGGCGTGGAGTACGAC 53115 || ||||||||| || | || | || | | | ||| ||||||| | ||| ||| Sbjct 17823 GGCGCTGATGCCGGCGGC-GCTTCGC-GAGGTCTCCCACCTCACGGGCATCGAGCTCGAT 17766 Query 53116 GCGCTGACCGGCGCG-ATCGCGAAGCTGCTGTATCCGCAGAGCAACATCATCGTCGGCGA 53174 | |||| | |||| |||||| |||||| | || | | ||| | | |||||| Sbjct 17765 CCCGTGACAG-CGCGCATCGCGCGACTGCTGCAGCCACGGGCGCGGATCGTTGCCGGCGA 17707 Query 53175 CTTCACGAAAACCGCGATGCCGCGCGAGTTCTTCGACGCGGCGATCGGCAACCCGCCCTT 53234 || || |||| ||||| ||||| ||||||| || |||||||| ||||| || Sbjct 17706 TTTTGCGCGCACCGAATTGCCG-GCGAG--CTTCGACCTCGCCATCGGCAATCCGCCTTT 17650 Query 53235 CGC-GTCCGTCGTCGTGACGAATGACCCCGAGTA-CAAGAAACAGGGGTTCATGCTGCAC 53292 | | | ||| | |||| |||| | ||| | | || | | ||||| Sbjct 17649 CTCCGACCG-CACCGTGCGCTCGGACCGTGCGTATCGATCGGTCGGCCTGCGC-CTGCAT 17592 Query 53293 GACTACTTCTTCGCCAAGACCATCGACCGCGTGAAACCGGGCGGCATGCTCGTG---TTC 53349 || |||||| | || | ||||||||| | |||| || |||| ||||| | ||| Sbjct 17591 GATTACTTCATTGCACGGGCCATCGACCTCTTGAAGCCCGGCGC---GCTCGCGGCCTTC 17535 Query 53350 GTCACCAGCAAGGGCACGATGGACAAGGCGAGCGACCGCGCGCGCCGTTACCTCGCCGAC 53409 || |||||| ||||||||||||||||||| || | || ||| || |||| | Sbjct 17534 GTGACCAGCGCGGGCACGATGGACAAGGCGGACGCCTCGGCTCGCGAGCACATCGCGAAG 17475 Query 53410 CGCGCGAACCTGATCGGCGCCATGCGCCTG-CCGCAGACCGCGTTCAAGGACAACGCCGG 53468 || | ||||||| ||||| |||||| ||| || | || ||| | | |||||| Sbjct 17474 TCAGCCGATCTGATCGCGGCCATCCGCCTGCCCGAAGGCAGC-TTCCGCGCCCGCGCCGG 17416 Query 53469 CACGGAAGTCGTTACGGACGTGCTGTTCCTCCAGAAGCGC 53508 |||||| ||||| || | || || ||| ||||||| Sbjct 17415 CACGGATGTCGTCGTCGATATTCTCTTTTTCCGGAAGCGC 17376 >seq47259 Length=37638 Score = 123 bits (136), Expect = 1e-23 Identities = 193/271 (71%), Gaps = 10/271 (4%) Strand=Plus/Minus Query 54930 CTACAACGAGAACTTCAACAACATCGCGCCG--CGCCAGTTCGACGGCTCGCACCTGACG 54987 ||||||||| || ||||||| | |||| | |||||| ||||||||| ||||| | Sbjct 35300 CTACAACGAAAAGTTCAACACC--CGCGTCAACCGCCAGCACGACGGCTCCCACCTCGCC 35243 Query 54988 CTGCCGGGCGTG-TCGC---TGCGCT--TCAACCTGCGCGAAAACCAGAAGCGCGCCATC 55041 || || ||| | || | || | | |||| || ||| |||||||| ||| | Sbjct 35242 CTCCCCGGCAAGGTCCCGGATGAGGTGATCAAGCTCCGCCGCCACCAGAAGAACGCTGTG 35183 Query 55042 TGGCGCGGCATTCAGGAAGGCGACATGTACCTCGCGCACGCGGTCGGCGCGGGCAAGACG 55101 ||||||||||| | || || |||| |||| |||| |||||||| |||||||| Sbjct 35182 TGGCGCGGCATCTACGAGCGCTTCATGCTGCTCGACCACGTCGTCGGCGCCGGCAAGACC 35123 Query 55102 TTCACGATGATCGCGACGGGCATGGAGGAGCGCCGGCTGGGCCTCTCCAACAAGCCGATG 55161 ||||| ||||||| | |||||| ||| ||| ||||||| ||| |||||| ||| Sbjct 35122 TTCACCGCGATCGCGCGCGTGATGGAGCGGCGGCGGATGGGCCTGTCCCGCAAGCCCATG 35063 Query 55162 TACGTGGTGCCGAACCACATGCTCGCGCAGT 55192 ||||||||||||||| || ||| |||| Sbjct 35062 ATCGTGGTGCCGAACCATCTGGTCGACCAGT 35032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204156319399266