Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq33136 86.0 6e-12 seq55485 84.2 2e-11 seq51632 82.4 7e-11 >seq33136 Length=388 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || |||||||| || ||| Sbjct 20 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTG 79 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| ||| ||||| | | ||||| || | |||||| Sbjct 80 TCTTGGATCTTCTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTGATG 139 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||| ||||||||||||| Sbjct 140 GTCTTACCGGTCAGCGTCTTCACGAAGATCTGCATGC 176 >seq55485 Length=2888 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||| || ||||||||||| || ||| Sbjct 77 TCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTG 136 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || ||| ||||||| ||| ||||| || ||| ||||| || | |||| Sbjct 137 TCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTC-GC-TGGACTCGACCTCGAGGGTGA 194 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||| ||||||||||| Sbjct 195 TGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 231 >seq51632 Length=2090 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | |||||||| || |||||||| || ||| Sbjct 26 TCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTG 85 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || ||| ||| ||| ||| ||||| || ||| ||||| || | |||| Sbjct 86 TCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTC-GC-TGGACTCGACCTCGAGGGTGA 143 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || || || || || ||||| |||||||||||| Sbjct 144 TCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447973238259120