Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq40565 143 4e-30 seq32748 141 1e-29 seq55257 122 1e-23 seq49642 89.7 8e-14 seq30489 89.7 8e-14 >seq40565 Length=2323 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 2302 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 2243 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| ||| | ||| | ||| ||||| Sbjct 2242 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACTCGCGGTGTGCTCAAGGTCTTC 2183 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 2182 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 2123 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||||| || | || | || ||||| | | || ||||| || Sbjct 2122 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCGCACCCTCTACGGTTTCGG 2064 >seq32748 Length=2154 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||| || || ||||||||||| || |||||| | || |||||||| ||| Sbjct 919 CTCCGCGACAACATTCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGTCGCGGT 978 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | |||| | ||| ||||| Sbjct 979 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGTGTTCTCAAGGTCTTC 1038 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 1039 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 1098 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 1099 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 1139 >seq55257 Length=4837 Score = 122 bits (134), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 2410 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 2469 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| ||| | ||| | ||| ||||| Sbjct 2470 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACTCGCGGTGTGCTCAAGGTCTTC 2529 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 ||| ||| ||| |||| || || | ||| ||||||||| Sbjct 2530 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCAC 2571 >seq49642 Length=1110 Score = 89.7 bits (98), Expect = 8e-14 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 1013 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 1072 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || ||||||||| |||| || || |||| ||||||| Sbjct 1073 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGA 1109 >seq30489 Length=1015 Score = 89.7 bits (98), Expect = 8e-14 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 918 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 977 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || ||||||||| |||| || || |||| ||||||| Sbjct 978 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGA 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79023320392206