Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq54335 95.1 2e-14 seq56171 89.7 6e-13 seq48397 86.0 8e-12 seq34751 82.4 1e-10 >seq54335 Length=118188 Score = 95.1 bits (104), Expect = 2e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 119469 GTCGCCAAGTGGTAAGGCAGCGGGTTTTGGTCCCGCCATTCGTGGGTTCGAATCCTA 119525 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 81753 GTAGCCAAGTGGTAAGGCAGCGGGTTTTGGTCCCGCCATTCCTGGGTTCGAATCCTA 81697 >seq56171 Length=386068 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 165219 TGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGT 165276 |||||| ||||||||||||||||||||||||| || |||| |||||| |||| ||| Sbjct 303424 TGCCCAGGTGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGCCGT 303483 Query 165277 GGAGGTTCAAGTCCTCTCTTGGGCAC 165302 | |||||| |||||| || ||||||| Sbjct 303484 GAAGGTTCGAGTCCTTTCCTGGGCAC 303509 >seq48397 Length=242080 Score = 86.0 bits (94), Expect = 8e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 165219 TGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGT 165276 |||||| |||| |||||||||||||||||||| || |||| |||||| |||| ||| Sbjct 185728 TGCCCAGGTGGTGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGCCGT 185669 Query 165277 GGAGGTTCAAGTCCTCTCTTGGGCACTAT 165305 | |||||| |||||| || ||||||| || Sbjct 185668 GAAGGTTCGAGTCCTTTCCTGGGCACCAT 185640 >seq34751 Length=230815 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165226 GTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGGAGGTTCA 165285 ||||||||| ||||||||||||||||||||||||||||||| || | |||| ||||| Sbjct 225578 GTGGCGGAACTGGTAGACGCGCTGGGTTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCG 225519 Query 165286 AGTCC 165290 ||||| Sbjct 225518 AGTCC 225514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627522597996800