Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq53501 123 4e-23 seq29743 118 2e-21 >seq53501 Length=235563 Score = 123 bits (136), Expect = 4e-23 Identities = 367/562 (65%), Gaps = 8/562 (1%) Strand=Plus/Minus Query 193631 GGCAGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTT 193690 || |||| | |||| |||||||| ||||| | || || || |||||| || ||||| Sbjct 2255 GGAAGTTCAGCCTGACGAGATCTACAATCTCGCGGCGCAGAGCCATGTTGCTGTGTCCTT 2196 Query 193691 TGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGC 193750 ||| ||| |||||||| | ||| || || | || | | | || |||||||| Sbjct 2195 CGAGGAGCCGGAGTATACGGCAAATTCCGACGCGCTCGGCCCGTTGCGTATTCTTGAAGC 2136 Query 193751 AGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACT 193810 | || || | ||| | |||||| | || ||||||| || || ||| ||||| Sbjct 2135 GATCCGCATTCTCGGACTTGAGAAAAAAACCCGATTCTATCAAGCCTCGACCTCGGAACT 2076 Query 193811 GTATGGTGGTGTTCTAGGCACTCCACTATCAGAA----ACCACACCATTTCATCCACGCT 193866 |||||| ||||| ||| | ||| |||||| || || || || |||| || | Sbjct 2075 GTATGGGCTTGTTC-AGGAA--ACAC-CTCAGAAGGAGACGACGCCCTTCTATCCTCGGT 2020 Query 193867 CTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCAT 193926 | || |||| || || ||| | || | || ||||| | ||| ||||| ||| ||| Sbjct 2019 CGCCGTATGCGGTTGCGAAGCTATACGCATACTGGATTACGGTGAACTATCGCGAGGCAT 1960 Query 193927 ATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGA 193986 | || | || | || || || |||||||| ||||| |||| | || |||| Sbjct 1959 ACGGGCTGTTTGCCTGCAACGGCATCCTGTTCAATCATGAATCACCAATTCGCGGCGAGA 1900 Query 193987 CATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGA 194046 |||| || || | ||||| || | | | || ||| |||| | ||| ||| Sbjct 1899 CATTCGTCACCAGAAAGATCACGCGCGCACTGGCTCGTATCAAACTTGGTCTTCAGGAGA 1840 Query 194047 TTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTG 194106 ||||||| || || || ||||| | |||||||| || || |||||||| | Sbjct 1839 AGGTTTATCTAGGGAACCTGAATGCGCTTCGCGATTGGGGGCATGCCCGCGATTATGTAG 1780 Query 194107 AAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTG 194166 | | |||| | ||| |||| || || | ||| || ||||| || || || ||||| | Sbjct 1779 AGATGCAGTGGATGATGCTGCAGCAAGACGTACCGGAGGATTACGTCATAGCAACAGGCG 1720 Query 194167 AACAGTATTCTGTTAGAGACTT 194188 |||| | || ||| | || || Sbjct 1719 AACAACACTCAGTTCGCGAATT 1698 >seq29743 Length=27281 Score = 118 bits (130), Expect = 2e-21 Identities = 359/552 (65%), Gaps = 2/552 (0%) Strand=Plus/Plus Query 193646 TGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTA 193705 ||||||||| || || | || || || || || ||||| || ||| |||||| || Sbjct 1872 TGAGATCTACAACCTCGCAGCGCAGAGCCACGTCGCCGTTTCGTTCGAGGAGCCAGAATA 1931 Query 193706 TACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGG 193765 || | ||| || ||| | || ||| | | || || || || | || || || Sbjct 1932 CACGGCGAATTCCGACGCTCTCGGGACTTTGCGTATCCTAGAGGCCATGCGGATCACAGG 1991 Query 193766 AATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCT 193825 | |||| | | ||| |||||||||| || || || ||||||||| || || Sbjct 1992 CTTAGAGAGGAAGGCACGCTTCTATCAGGCGTCGACATCTGAGCTGTATGGTT-TGGTCC 2050 Query 193826 AGGCACTCCACTATCAGAA-ACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAA 193884 ||| ||| | | || | || ||||| ||| |||| ||||| || || | ||| || | Sbjct 2051 AGGAGATCCCCCAAAAGGAGACGACACCTTTTTATCCGCGCTCACCGTACGCTGTCGCCA 2110 Query 193885 AGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTT 193944 || | |||| || ||||||| ||| || || || | || | | | || | Sbjct 2111 AGCTTTATGCCTACTGGATCACGGTGAACTACCGCGAAGCTTACGACATGTATGCCTGCA 2170 Query 193945 CTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGA 194004 || |||||||| ||||||||||| || | || || || || || || || |||| Sbjct 2171 ACGGCATTCTCTTTAATCACGAATCCCCGGTGCGGGGCGAAACCTTCGTGACGCGAAAGA 2230 Query 194005 TTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATC 194064 | || | | ||| | ||| | | || | ||| | ||||| ||||| |||| Sbjct 2231 TCACGCGTGCTTTGGCGCGTATCCATTTGGGCCTGCAGGAACGGCTTTACCTTGGCAATC 2290 Query 194065 TTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGT 194124 | | || | | |||||||| ||||| || ||||| ||| | ||| | ||| Sbjct 2291 TGGACGCCTTGCGCGATTGGGGGCACGCGCGTGACTATGTCGAAATGCAATGGCTGATGC 2350 Query 194125 TGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAG 194184 |||| ||||| |||| || |||| ||||||||||| || | || |||||||| ||| Sbjct 2351 TGCAGCAGGACAAACCGGAAGATTTCGTGATTGCTACGGGCGTGCAACATTCTGTTCGAG 2410 Query 194185 ACTTTGTGAATG 194196 | || || |||| Sbjct 2411 ATTTCGTCAATG 2422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806982421285520