Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_006938.1 Length=63649 Score E Sequences producing significant alignments: (Bits) Value seq24082 107 8e-19 seq55600 93.3 2e-14 >seq24082 Length=208990 Score = 107 bits (118), Expect = 8e-19 Identities = 124/165 (75%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 7543 TTCCGGCTCTTCGGCTACGCGGGGACGGGCAAGACCACGCTGGCCAAGCACCTGGCCGAG 7602 ||||| || ||||||| || || || ||||||||||||||||| |||| | |||||| Sbjct 158828 TTCCGCCTGTTCGGCTTTGCCGGCACCGGCAAGACCACGCTGGCGCGGCACATCGCCGAG 158769 Query 7603 GGCGTCTCGGGCCGAGTGAAGTTCGCCGCGTACACTGGCAAGGCGGCCCAGGTCCTCAGC 7662 |||||| ||| |||||||||||||| | ||| |||||||| || | ||| | || Sbjct 158768 GGCGTCGATGGCGAGGTGAAGTTCGCCGCCTTCACCGGCAAGGCCGCACTCGTCATGCGC 158709 Query 7663 GAGAAGGGCTGC-CCG--GCCACCACAATACACAAGCTGATCTAC 7704 | ||||| ||| || || |||| || ||| |||||||||| Sbjct 158708 AACAAGGGTTGCGACGACGCGTCCACCATCCACTCGCTGATCTAC 158664 Score = 87.8 bits (96), Expect = 7e-13 Identities = 141/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 7921 GTCGTTGACGAGTGTTCGATGGTCGACATGCAGG--TCGGTCAAGACCTCCTCTCCTTCG 7978 ||| | ||||| || ||||||||||| ||| | | || | ||| | | || |||| Sbjct 158585 GTCATCGACGAATGCTCGATGGTCGA--TGCCGAATTGGGGCGCGACTTGATGTCGTTCG 158528 Query 7979 ACGTCCCCATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAGGTGGCT 8038 || ||| || | ||||| ||||| || || ||||| ||||| || ||| || |||| Sbjct 158527 ACTGCCCTCTCTTGGTGCTGGGCGATCCCGCGCAGCTGCCGCCGATCCAGGGCGGCGGCT 158468 Query 8039 TCTTCACGGAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCAAGGACA 8098 ||||||| | | ||||||| ||||||||| || | || || |||||| ||||| Sbjct 158467 TCTTCACCAATTCGGAGCCGGATGCGATGCTGACCGAGGTGCATCGTCAGGCCCAGGACG 158408 Query 8099 ACCCCATCATCGAGATGGCGA 8119 | || ||| | |||| ||| Sbjct 158407 ATCCGATCGTGCGGATGTCGA 158387 >seq55600 Length=68428 Score = 93.3 bits (102), Expect = 2e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 7927 GACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCTCCTTCGACGTCCCC 7986 ||||| || |||||||| || | || |||| | ||||| | || ||||| ||| Sbjct 48326 GACGAATGCTCGATGGTGGATGCGGAGCTCGGCCGCGACCTGATGTCGTTCGATTGCCCG 48267 Query 7987 ATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAGGTGGCTTCTTCACG 8046 | || ||||| ||||| ||||| ||| | ||||| | ||| || ||||| ||||| Sbjct 48266 CTGCTGGTGCTGGGCGATCCGGCGCAGTTGCCGCCGATTCAGGGCGGCGGCTTTTTCACC 48207 Query 8047 GAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCAAGGACAACCCCAT 8105 || ||| ||||||| |||||||||||| | || || ||||| ||||| | || || Sbjct 48206 GATGCCGAGCCGGATGCGATGCTGACGGAGGTTCATCGTCAGGCACAGGACGATCCGAT 48148 Score = 89.7 bits (98), Expect = 2e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 7543 TTCCGGCTCTTCGGCTACGCGGGGACGGGCAAGACCACGCTGGCCAAGCACCTGGCCGAG 7602 |||||||| |||||||| || || || ||||||||||| ||||| ||| | || || Sbjct 48575 TTCCGGCTGTTCGGCTATGCCGGCACCGGCAAGACCACCCTGGCGCGGCATATCGCGGAC 48516 Query 7603 GGCGTCTCGGGCCGAGTGAAGTTCGCCGCGTACACTGGCAAGGCGGCCCAGGTCCTCAGC 7662 |||||| ||| ||||| ||||| |||| ||| |||||||| || | ||| | || Sbjct 48515 GGCGTCAACGGCAACGTGAAATTCGCAGCGTTCACCGGCAAGGCCGCGCTGGTGATGCGC 48456 Query 7663 GAGAAGGGCTGC 7674 | ||||||||| Sbjct 48455 AACAAGGGCTGC 48444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203411235013820