Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq47808 159 4e-34 seq47532 159 4e-34 seq38762 159 4e-34 seq38761 159 4e-34 >seq47808 Length=3094 Score = 159 bits (176), Expect = 4e-34 Identities = 374/559 (67%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 450 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 509 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 510 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 569 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || ||||| | || || | ||| | | || ||| || | | Sbjct 570 ATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTTG 629 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 630 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 689 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || ||||| ||| || || || || ||||| | || ||| Sbjct 690 CGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 749 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| ||||| || |||||||| || | ||||||| Sbjct 750 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGC 809 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | || ||| ||| || ||||| ||||| Sbjct 810 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGCG 869 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || |||| || || || || || | | ||||| | |||| || | ||| Sbjct 870 GCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 928 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | || || || | | ||| |||||||| | ||||| || || ||||| ||||| Sbjct 929 GTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCTT 988 Query 33837 TTTATACATGTTCCAGATG 33855 || ||||| | ||||||| Sbjct 989 CTTGTACATCTCCCAGATG 1007 >seq47532 Length=3156 Score = 159 bits (176), Expect = 4e-34 Identities = 374/559 (67%), Gaps = 8/559 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 2707 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2648 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 2647 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 2588 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || ||||| | || || | ||| | | || ||| || | | Sbjct 2587 ATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTTG 2528 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 2527 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 2468 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || ||||| ||| || || || || ||||| | || ||| Sbjct 2467 CGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 2408 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| ||||| || |||||||| || | ||||||| Sbjct 2407 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGC 2348 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | || ||| ||| || ||||| ||||| Sbjct 2347 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGCG 2288 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || |||| || || || || || | | ||||| | |||| || | ||| Sbjct 2287 GCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 2229 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | || || || | | ||| |||||||| | ||||| || || ||||| ||||| Sbjct 2228 GTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCTT 2169 Query 33837 TTTATACATGTTCCAGATG 33855 || ||||| | ||||||| Sbjct 2168 CTTGTACATCTCCCAGATG 2150 >seq38762 Length=2104 Score = 159 bits (176), Expect = 4e-34 Identities = 374/559 (67%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 1281 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1340 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 1341 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 1400 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || ||||| | || || | ||| | | || ||| || | | Sbjct 1401 ATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTTG 1460 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1461 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 1520 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || ||||| ||| || || || || ||||| | || ||| Sbjct 1521 CGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 1580 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| ||||| || |||||||| || | ||||||| Sbjct 1581 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGC 1640 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | || ||| ||| || ||||| ||||| Sbjct 1641 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGCG 1700 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || |||| || || || || || | | ||||| | |||| || | ||| Sbjct 1701 GCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 1759 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | || || || | | ||| |||||||| | ||||| || || ||||| ||||| Sbjct 1760 GTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCTT 1819 Query 33837 TTTATACATGTTCCAGATG 33855 || ||||| | ||||||| Sbjct 1820 CTTGTACATCTCCCAGATG 1838 >seq38761 Length=2091 Score = 159 bits (176), Expect = 4e-34 Identities = 374/559 (67%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 1268 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1327 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 1328 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 1387 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || ||||| | || || | ||| | | || ||| || | | Sbjct 1388 ATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCTTG 1447 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1448 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 1507 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || ||||| ||| || || || || ||||| | || ||| Sbjct 1508 CGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 1567 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| ||||| || |||||||| || | ||||||| Sbjct 1568 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGC 1627 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | || ||| ||| || ||||| ||||| Sbjct 1628 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGGCG 1687 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || |||| || || || || || | | ||||| | |||| || | ||| Sbjct 1688 GCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 1746 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | || || || | | ||| |||||||| | ||||| || || ||||| ||||| Sbjct 1747 GTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCCTT 1806 Query 33837 TTTATACATGTTCCAGATG 33855 || ||||| | ||||||| Sbjct 1807 CTTGTACATCTCCCAGATG 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622505359124720