Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq54758 98.7 9e-16 seq30200 96.9 3e-15 seq55903 95.1 1e-14 seq47552 95.1 1e-14 seq54362 87.8 2e-12 seq55485 86.0 6e-12 seq45692 84.2 2e-11 >seq54758 Length=5143 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||||||| |||| |||| || | | Sbjct 3554 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTAGAGTCCAGC 3495 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || ||||| ||||| || || || || ||||| || Sbjct 3494 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 3435 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || || || || | | | | || |||||| ||| Sbjct 3434 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGTACCCTCGCCGACTACAAC 3375 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| |||| || ||||| Sbjct 3374 ATCCAGAAGGAGTCCACTCTCCACCTCGTCCT 3343 >seq30200 Length=2978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || || | |||||| |||| | || || | Sbjct 2358 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCAG 2417 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || || || ||||| ||||| || || || |||||||| || Sbjct 2418 CGACACCATCGAGAACGTGAAGCAGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCA 2477 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || ||||| || | | | || |||||| || Sbjct 2478 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 2537 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||| || || || || ||||||| ||||| Sbjct 2538 CATTCAGAAGGAGTCCACCCTCCATCTCGTCCT 2570 >seq55903 Length=2024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| |||| | || || | | Sbjct 478 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCAGC 419 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| || || || ||||||||||| Sbjct 418 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 359 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || |||||| || ||||| || | | | | || |||||| ||| Sbjct 358 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 299 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || |||| || || || Sbjct 298 ATTCAGAAGGAGTCCACCCTCCACCTCGTGCT 267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 26761 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 ||| ||| ||||||| | || || || || | || || || | || ||| |||| | Sbjct 1156 CAACCAACAATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTC 1097 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 || || | ||||||||||||| | ||||| |||||||| ||||| || || || || Sbjct 1096 GAGTCGAGCGACACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCC 1037 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939 || ||||| || | ||||| | || || || || ||||| || | | | | | Sbjct 1036 CCTGATCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACGCTGGCC 977 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| |||||||| || || || || |||| || || || Sbjct 976 GACTACAACATTCAGAAGGAGTCCACGCTCCACCTCGTGCT 936 >seq47552 Length=2045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||||||| |||| | || || | | Sbjct 1590 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCCAGC 1649 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || ||||| ||||| || || || |||||||| || Sbjct 1650 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1709 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||| || || ||||| || | | | | | |||||| ||| Sbjct 1710 CAGCGTCTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 1769 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| |||| || ||||| Sbjct 1770 ATCCAGAAGGAGTCCACTCTCCACCTCGTCCT 1801 >seq54362 Length=8978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || || |||| || |||| | || || | Sbjct 5015 AATGCAGATCTTCGTGAAGACCCTCACCGGTAAGACGATTACGCTCGAGGTCGAGTCCAG 4956 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || || |||||||| ||||| || || || |||||||| || Sbjct 4955 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCA 4896 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || || || || ||||| || | | | | || |||||| || Sbjct 4895 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 4836 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || ||||| Sbjct 4835 CATCCAGAAGGAGTCCACGCTCCACCTCGTCCT 4803 >seq55485 Length=2888 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| |||| | || || | | Sbjct 231 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 172 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| |||||||| ||||| || || || |||||||| || Sbjct 171 GACACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 112 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || || || || || || || | | | | || |||||| ||| Sbjct 111 CAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCGCCGACTACAAC 52 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || || || Sbjct 51 ATCCAGAAGGAGTCCACCCTCCACCTCGTGCT 20 >seq45692 Length=9336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| |||| | || || | | Sbjct 5091 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 5032 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || ||||| ||||| || || || || || ||||| Sbjct 5031 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 4972 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || | ||||| | || |||||| || ||||| || | | ||| || ||||| || Sbjct 4971 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCG-TACGCTGGCTGACTACAA 4913 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || |||| || ||||| Sbjct 4912 TATTCAGAAGGAGTCCACCCTCCACCTCGTCCT 4880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478322896726240