Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq55903 107 2e-18 seq54362 105 6e-18 seq47552 98.7 9e-16 seq45692 98.7 9e-16 seq30200 96.9 3e-15 seq55485 95.1 1e-14 seq51632 91.5 1e-13 seq46100 91.5 1e-13 seq8653 91.5 1e-13 seq54758 89.7 4e-13 seq36713 89.7 4e-13 seq31632 87.8 2e-12 seq26853 86.0 5e-12 seq35820 84.2 2e-11 >seq55903 Length=2024 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| || ||| ||| | Sbjct 478 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCAGC 419 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| ||||||||||| Sbjct 418 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 359 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | || ||| || ||| Sbjct 358 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 299 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 298 ATTCAGAAGGAGTCCAC 282 Score = 102 bits (112), Expect = 7e-17 Identities = 147/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 23983 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| ||| ||||||| | || || || || | || || || | |||||| |||| ||| Sbjct 1156 CAACCAACAATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTC 1097 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| | | ||||||||||||| | ||||| |||||||| ||||| || ||||| || Sbjct 1096 GAGTCGAGCGACACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCC 1037 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161 || ||||| ||| | || || | || || ||||| ||||| || | | | | | | Sbjct 1036 CCTGATCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACGCTGGCC 977 Query 24162 GATTATAACATTCAAAAAGAATCTAC 24187 || || |||||||| || || || || Sbjct 976 GACTACAACATTCAGAAGGAGTCCAC 951 >seq54362 Length=8978 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || ||||||| |||| |||||| ||| Sbjct 5015 AATGCAGATCTTCGTGAAGACCCTCACCGGTAAGACGATTACGCTCGAGGTCGAGTCCAG 4956 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || |||||||| ||||| || ||||| |||||||| || Sbjct 4955 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCA 4896 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || || ||||| ||||| || | | | | | || ||| || || Sbjct 4895 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 4836 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 4835 CATCCAGAAGGAGTCCAC 4818 >seq47552 Length=2045 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| || ||| ||| | Sbjct 1590 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCCAGC 1649 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| || ||||| ||||| || ||||| |||||||| || Sbjct 1650 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1709 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| ||||| || | | | | | | ||| || ||| Sbjct 1710 CAGCGTCTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 1769 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 1770 ATCCAGAAGGAGTCCAC 1786 >seq45692 Length=9336 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | |||||| |||| || ||| ||| | Sbjct 5319 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAGTCCAGC 5260 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || || ||||| ||||| || ||||| ||||| || || Sbjct 5259 GACACCATCGAAAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 5200 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | || ||| || ||| Sbjct 5199 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 5140 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 5139 ATCCAGAAGGAGTCTAC 5123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| ||| | Sbjct 5091 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 5032 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| || ||||| ||||| || ||||| || || ||||| Sbjct 5031 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 4972 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||||||||| ||||| || Sbjct 4971 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGA 4937 >seq30200 Length=2978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| || ||| ||| Sbjct 2358 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCAG 2417 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || || ||||| ||||| || ||||| |||||||| || Sbjct 2418 CGACACCATCGAGAACGTGAAGCAGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCA 2477 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || |||||||| ||||| || | | | | || ||| || || Sbjct 2478 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 2537 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||| || || || || Sbjct 2538 CATTCAGAAGGAGTCCAC 2555 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || ||||||| |||| ||||| | | | Sbjct 2587 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACGATTACTCTCGAGGTCGAATCGAGC 2646 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| ||||| || || Sbjct 2647 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 2706 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| ||||| || | | | | | | ||| || ||| Sbjct 2707 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 2766 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 2767 ATCCAGAAGGAGTCCAC 2783 >seq55485 Length=2888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| ||| | Sbjct 231 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 172 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||||| ||||| || || || |||||||| || Sbjct 171 GACACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 112 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| || || || | | | | | || ||| || ||| Sbjct 111 CAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCGCCGACTACAAC 52 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 51 ATCCAGAAGGAGTCCAC 35 >seq51632 Length=2090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| |||||| ||| | Sbjct 180 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTCGAGTCCAGC 121 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || |||||||| ||||| || || || || || ||||| Sbjct 120 GACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 61 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||| ||||| ||||| || Sbjct 60 CAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGA 26 >seq46100 Length=1140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | |||||| |||| |||||| ||| Sbjct 867 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAG 926 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || |||||||| ||||| || || || || ||||| || Sbjct 927 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCA 986 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || || ||||| || || || | | | | | || ||| || || Sbjct 987 GCAGCGTCTTATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAA 1046 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 1047 CATCCAGAAGGAGTCCAC 1064 >seq8653 Length=183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| ||| | Sbjct 174 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCCAGC 115 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || || || |||||||| || Sbjct 114 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 55 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||||||||| ||||| || Sbjct 54 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGA 20 >seq54758 Length=5143 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| || ||| ||| | Sbjct 3554 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTAGAGTCCAGC 3495 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| || ||||| ||||| || || || || ||||| || Sbjct 3494 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 3435 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| || || || | | | | | || ||| || ||| Sbjct 3434 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGTACCCTCGCCGACTACAAC 3375 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 3374 ATCCAGAAGGAGTCCAC 3358 >seq36713 Length=1850 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 || || ||||| | ||||| || | || ||| |||| |||||| ||| |||||||||| Sbjct 665 TTCGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGACACCATC 724 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAG 24113 ||| ||||||| || ||||| ||||| || ||||| |||||||| || ||| Sbjct 725 GAGAAAGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAG 778 >seq31632 Length=1334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 152 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 211 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| |||||||| || Sbjct 212 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 271 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | | || || ||| Sbjct 272 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCTGACTACAAC 331 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || |||| Sbjct 332 ATTCAGAAGGAGTCCACCCTTCA 354 >seq26853 Length=3834 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | |||||| |||| |||||| | Sbjct 44 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATTACCCTCGAGGTCGAGAGCTCG 103 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| || ||||| || Sbjct 104 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 163 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | || || || ||| Sbjct 164 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAAC 223 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 224 ATCCAGAAGGAGTCCAC 240 >seq35820 Length=5258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| ||| | Sbjct 192 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 133 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || |||||||| ||||| || || || || ||||| || Sbjct 132 GACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 73 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| || || || | | | | | || ||| || ||| Sbjct 72 CAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAAC 13 Query 24171 ATTCAAAAAGA 24181 || || || || Sbjct 12 ATCCAGAAGGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429638680715010