Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq36931 161 3e-35 >seq36931 Length=650932 Score = 161 bits (178), Expect = 3e-35 Identities = 413/621 (67%), Gaps = 6/621 (1%) Strand=Plus/Minus Query 43480 GACCGACC-GCCCGAGATTCGGATTCGTGATGTAGTAGTTGGCCGGATCGAGGTAGGCTT 43538 ||||||| |||| || |||||||||| |||||| |||| ||||||| ||||| | Sbjct 438226 GACCGACTTGCCCCAG-TTCGGATTCGGGATGTACCAGTTCTCCGGATCCTCATAGGCCT 438168 Query 43539 TCGACTTCACCATCTCTTCCGGAAACTCGTACAGCACGCCGAGCGACTTCCGGTCGACGA 43598 ||||||| | |||||| ||||| || ||||| | | || || |||| || | Sbjct 438167 TCGACTTGATCATCTCCTCCGGGAATTCGTAGATGATCGGAAGGCTCTCGGGGTCAACCA 438108 Query 43599 TTTTGCCGTCACGCACGTCGCGGTAGTACTGCAACTTCTCTTTGAACACACCGGCCGGCG 43658 ||||| || || | ||| ||| | | || ||||| || ||| || ||||| |||| Sbjct 438107 GCTTGCCATCCCGGATGTCCCGGAACGTCGTCAGCTTCTGTTCGAAGACGCCGGCGGGCG 438048 Query 43659 GCT-CGTCGCTTTGCGTTGTCAGGATGATGACCCACCCTTCATCCCGCGACACCTGGCCT 43717 ||| || || | |||||||| | || ||| |||||||| ||||| | | || Sbjct 438047 GCTTCGGCGACT-GCGTTGTCGCGTAGACGACGAACCCTTCAGGGCGCGAGGTCAGACCG 437989 Query 43718 CCGGTCGCCTCCATGAA-CATCGCTTCTGCGTTCGCCCTCTTGCCGAAGACCCAGTGCTC 43776 || ||| || || | | ||||| || ||||| || | | |||||| | |||| |||| Sbjct 437988 CCC-TCGGCTTCACGGATCATCGACTCGGCGTTGGCACGCGAGCCGAACAGCCAGAGCTC 437930 Query 43777 GTCGATAAGAATCTTTCCTGACTTCTTGCCCGATACCGTGTCAGTGTCGGCCGCAACCAC 43836 ||||| || | | | ||| ||||| || || || || |||||||||| | || Sbjct 437929 GTCGACCAGGAGCCCGATGGTCTTTTTGCCAGAGACTGTCTCGCTGTCGGCCGCCGCGAC 437870 Query 43837 CTTCAACGACGCTCGACTGACGCGGTGCGTTATCGTGCGGATGTGATCTTGGACATGAAA 43896 |||| | || | | ||| ||||| ||| || | || ||||| || | Sbjct 437869 TTTCAGGAAGGCCCCGGTCGTGCGATGCGTGATCAGACGCTGGCTGTCCTGGACGTGCAG 437810 Query 43897 CAGCTCGGACAGCTCTGCATCGGCCCGGATCATCCCCGCCGCCGGTTTGAAGCTGTTGTC 43956 ||||| | |||| | ||||| |||||||| | ||| || || |||||| Sbjct 437809 CAGCTTGAGGAGCTGCTCGTCGGCGCGGATCATGTCACGCGCGGGGAAAAACGAGTTGTC 437750 Query 43957 CGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCTCTTCTTCCTCGCGCCAACACAAAAT 44016 |||||||||||| ||||| || || || | ||| | |||||||| || Sbjct 437749 CGCGACCTCCTTGGTCGGCGCCAGGATGTAGAACTCGCCGCTGTCGCGCCAGTTGCGCAT 437690 Query 44017 GACCGCCGTCAGCATGATTCCGGCCGCGATCGTCGATTTCGTATTCTTCTTGCTGATCAG 44076 | || |||| |||| | |||||||| | |||||| || || || |||||| || Sbjct 437689 CAGGGCGGTCACCATGGTGCCGGCCGCCAACGTCGACTTGGTGTTTTTCTTGGCGACGCA 437630 Query 44077 CAGAAAGAACTCGCGGATCAG 44097 ||| ||||| | |||||||| Sbjct 437629 CAGGAAGAAATACCGGATCAG 437609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143320963607672