Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq55950 96.9 3e-15 seq47552 84.2 2e-11 seq28750 82.4 6e-11 >seq55950 Length=6881 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 || ||||||||| || || || || ||||| || || ||||||||| |||| ||||| Sbjct 1153 AACAATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTC 1094 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||||||||| ||| | || || ||||| || || || || ||| ||||| ||| Sbjct 1093 CAGCGACACCATTGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 1034 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| | || || | || ||||| || | || || | | || ||||||| || Sbjct 1033 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACGCTGGCCGACTA 974 Query 115462 TAACATTCAAAAAGAGTCTAC 115482 ||||| || || ||||| || Sbjct 973 CAACATCCAGAAGGAGTCCAC 953 >seq47552 Length=2045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || |||||||| || || || || || || || || ||||||||| |||| |||||| Sbjct 1359 AACATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCC 1418 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||||||||| | | | || || || || || || || || ||| ||||| |||| Sbjct 1419 AGCGACACTATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAT 1478 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| | || || | || ||||| || | || || | ||| | ||||| || Sbjct 1479 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTAC 1538 Query 115463 AACATTCAAAAAGAGTCTACT 115483 ||||| || || ||||| ||| Sbjct 1539 AACATCCAGAAGGAGTCCACT 1559 >seq28750 Length=3694 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 || |||||| || ||||| || || ||||| || || ||||||||| |||| ||||| Sbjct 3364 AACAATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAGTC 3423 Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 ||||||||| | | || || || || || || || || || || || | ||| | Sbjct 3424 CAGCGACAC-GATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCG 3482 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 | ||||| | || || | || ||||| || | || || | | ||| ||||||| | Sbjct 3483 ACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACT 3542 Query 115461 ATAACATTCAAAAAGAGTCTAC 115482 | |||||||| || ||||| || Sbjct 3543 ACAACATTCAGAAGGAGTCCAC 3564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425049856281040