Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_007809.1 Length=59446 Score E Sequences producing significant alignments: (Bits) Value seq55600 98.7 4e-16 seq24082 87.8 7e-13 >seq55600 Length=68428 Score = 98.7 bits (108), Expect = 4e-16 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 34642 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 34701 || ||||||||||| ||||||| ||| ||||| ||||| || ||||| |||||||||||| Sbjct 47720 GACGAGTTCGACTACGGCTATGTGCTGACCGTGCACAAATCCCAGGGTTCCCAGTGGAAC 47661 Query 34702 AACGTCCTGCTGTTTGACGAGTGGTATG---GGAAGGA---CCGGAAGGAATGGTTGTAC 34755 ||||| ||||||| |||||| | | | |||| ||| ||| | ||| Sbjct 47660 GACGTCGTGCTGTTCGACGAGAGCTTCGCCTTCCAGGACAGCCGCGCCCGCTGGCTCTAC 47601 Query 34756 ACCGCCATTACCCGGGCCGCGGAACG 34781 |||| ||||||||| |||||| |||| Sbjct 47600 ACCGGCATTACCCGCGCCGCGAAACG 47575 >seq24082 Length=208990 Score = 87.8 bits (96), Expect = 7e-13 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33675 GCCCGTGTTCCAGCTCGCCGGGTACGCCGGAACCGGCAAGACCACCCTGGCCAAACACCT 33734 ||| ||||||| || ||| | ||||| |||||||||||||| ||||| ||| | Sbjct 158835 GCCGGTGTTCCGCCTGTTCGGCTTTGCCGGCACCGGCAAGACCACGCTGGCGCGGCACAT 158776 Query 33735 CGCCGCGACCGTCAATGGTCCCGTGTACTTCGCCGCCTACACCGGCAAGGCCGCTCACGT 33794 ||||| | |||| |||| ||| | |||||||||| ||||||||||||||| | ||| Sbjct 158775 CGCCGAGGGCGTCGATGGCGAGGTGAAGTTCGCCGCCTTCACCGGCAAGGCCGCACTCGT 158716 Query 33795 C 33795 | Sbjct 158715 C 158715 Score = 84.2 bits (92), Expect = 8e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 34642 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 34701 || |||||||| || ||||| | ||| ||||| ||||||||||||||||| || ||| || Sbjct 157970 GACGAGTTCGATTACGGCTACGTGCTGACCGTGCACAAGTCGCAGGGCTCGCAATGGGAC 157911 Query 34702 AACGTCCTGCTGTTTGACGAG 34722 | ||| ||||||| |||||| Sbjct 157910 GATGTCGTGCTGTTCGACGAG 157890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189977504708032