Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq53477 127 1e-24 seq52966 105 4e-18 seq31517 105 4e-18 seq24523 105 4e-18 seq45692 89.7 3e-13 >seq53477 Length=5923 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 4548 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 4607 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4608 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4642 >seq52966 Length=2273 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2214 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2155 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 2154 GCTGACAATATTTAGCCTT 2136 >seq31517 Length=712 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 398 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 339 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 338 GCTGACAATATTTAGCCTT 320 >seq24523 Length=801 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 404 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 463 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 464 GCTGACAATATTTAGCCTT 482 >seq45692 Length=9336 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| |||||| ||||||||||| |||| || ||| |||| || | || Sbjct 4889 TGGAGGGTGGACTCCTTCTGAATATTGTAGTCAGCCAGCGTACGGCCGTCCTCGAGCTGC 4948 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || || || || ||||| | ||||| ||| || |||||| || || Sbjct 4949 TTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 5008 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||| || |||| || || || | || || || | || || || || || ||| Sbjct 5009 TGCTTGACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 5068 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | || || ||||| ||||||||| Sbjct 5069 AGCGTCTTGACGAAGATCTGCATG 5092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334715569566602