Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq56113 93.3 5e-14 seq50570 93.3 5e-14 seq45826 93.3 5e-14 >seq56113 Length=2093 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 1759 TTCATCGGACCCACCTACTACCAGAGGCTAAAGCACATGGTGGACGACAAGATCCACTCG 1818 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || | | ||| | ||| || ||| | |||||| |||||||||| | | Sbjct 1819 CGCGCTCGCGGCCCGGTCCAGATTCTCACGAGGCAGCCCGTGGAGGGTCGATCGCGCGAC 1878 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| ||| | || ||||||||||| |||||||| | ||||||||| |||| Sbjct 1879 GGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCGCACGGCGCGGCCCAG 1938 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 1939 TTCCTCAAGGAGCG 1952 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 15047 ACGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCAT 15105 |||||| |||| ||||||||||| | || || | ||| || ||||| ||| ||||| Sbjct 1244 ACGCCCCAGATCGGCGACAAGTTCAGTTCGCGTCACGGC-CAGAAGGGTACGGTGGGCAT 1302 Query 15106 GATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCAT 15165 || | || ||||| ||||||||||||| | ||||| || |||||||| ||| | Sbjct 1303 CATGTACCGGCAGGAGGACATGCCCTTTAACATCGAGGGCATCACCCCCGACATCATCGT 1362 Query 15166 CAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||||| || ||| || || || |||||||| Sbjct 1363 CAACCCGCACGCCATTCCCTCGCGTATGACCAT 1395 >seq50570 Length=791 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 280 TTCATCGGACCCACCTACTACCAGAGGCTAAAGCACATGGTGGACGACAAGATCCACTCG 339 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || | | ||| | ||| || ||| | |||||| |||||||||| | | Sbjct 340 CGCGCTCGCGGCCCGGTCCAGATTCTCACGAGGCAGCCCGTGGAGGGTCGATCGCGCGAC 399 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| ||| | || ||||||||||| |||||||| | ||||||||| |||| Sbjct 400 GGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCGCACGGCGCGGCCCAG 459 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 460 TTCCTCAAGGAGCG 473 >seq45826 Length=1781 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 1502 TTCATCGGACCCACCTACTACCAGAGGCTAAAGCACATGGTGGACGACAAGATCCACTCG 1443 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || | | ||| | ||| || ||| | |||||| |||||||||| | | Sbjct 1442 CGCGCTCGCGGCCCGGTCCAGATTCTCACGAGGCAGCCCGTGGAGGGTCGATCGCGCGAC 1383 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| ||| | || ||||||||||| |||||||| | ||||||||| |||| Sbjct 1382 GGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCGCACGGCGCGGCCCAG 1323 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 1322 TTCCTCAAGGAGCG 1309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610958354939200