Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq54303 307 5e-79 seq55957 297 9e-76 >seq54303 Length=793959 Score = 307 bits (340), Expect = 5e-79 Identities = 532/763 (70%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 65403 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGG-TACCCGAGGGGCCGG 65461 || ||||||| ||| || || ||| || |||||||| || | ||| |||||| | Sbjct 1494 CCTCCGGCTCCCTCGGGCTTGATATCGCGCTCGGCATCGGCGGCCTGCCCAAGGGGC-GT 1552 Query 65462 GTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGGTG 65521 || || || |||||||| || ||||| || || ||| | || || || || ||||| Sbjct 1553 GTCGTCGAGATCTACGGGCCGGAATCGTCGGGCAAGACGACGCTGGCGCTGCATACGGTG 1612 Query 65522 GCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGAC 65581 || | ||||||||| || |||| ||||| |||||||| |||||| | || ||| Sbjct 1613 GCGGAGGCGCAGAAGAAGGGCGGCATTTGCGCCTTTATCGACGCCGAGCACGCGCTCGAC 1672 Query 65582 CCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGAC 65641 || | || ||| ||| || || || ||||| | || || | ||||| ||| Sbjct 1673 CCGGTCTATGCCCGCAAGCTGGGCGTCAACATCGACGAGCTGCTGATCTCGCAGCCCGAC 1732 Query 65642 ACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA-- 65699 || ||||||||||| ||||||||| ||| | | || || || | | ||| | Sbjct 1733 ACCGGCGAGCAGGCGCTGGAGATCTGCGACACCTTGGTGCGCTCCGGTG--CCGTCGACG 1790 Query 65700 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 65759 | |||| || || || || ||||| ||||||||| ||||||||||| ||||| || | Sbjct 1791 TTCTCGTGGTCGATTCGGTCGCGGCGCTGGTGCCGAAGGCCGAGCTCGAGGGCGAGATGG 1850 Query 65760 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTG 65819 | ||| | |||||||| || ||| | ||| ||||| | ||||||||||| | Sbjct 1851 GCGACGCGCTGCCGGGCCTGCAGGCCCGCTTGATGAGCCAGGCGCTACGCAAGCTCACGG 1910 Query 65820 GCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 65879 | ||||| || |||||||| || | ||| |||||||| | ||| |||||||| Sbjct 1911 CCTCCATCAACAAGTCCAACACGATGGTGATCTTCATCAACCAGATCCGCATGAAGATCG 1970 Query 65880 GCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACG 65939 || ||| |||||| || || || ||||| |||||||| || ||| ||||||| Sbjct 1971 GC---GTGATGTACGGCTCGCCTGAAACGACCACCGGCGGCAATGCGCTGAAATTCTACG 2027 Query 65940 CCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCG 65999 ||||||||||| | || |||| ||||||| | | ||||| | || |||| |||| Sbjct 2028 CCTCAGTCCGCCTCGACATCCGCCGCATCGGCGCGATCAAGGAGCGTGACGAGGTGGTCG 2087 Query 66000 GCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGC-- 66057 ||||| ||| || || ||||| || ||||||||||||| |||||| | ||| || Sbjct 2088 GCAACACCACGCGCGTCAAGGTGGTGAAGAACAAGCTGG---CGCCGCCCTTCAA-GCAG 2143 Query 66058 --CGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGA-GGTCGAACTCCTCGACCT 66114 ||||||| | || ||||||| |||||| |||| | || || || ||||||| || Sbjct 2144 ATCGAGTTCGACATCATGTACGGCGAGGGCGTCTC-CAAGATGGGTGAGATCCTCGATCT 2202 Query 66115 GGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 66157 | ||| | ||| | || ||||||| |||||||||||| Sbjct 2203 CGGCGTCAAGGCCGGCATCGTCGAGAAGTCCGGCGCCTGGTTC 2245 >seq55957 Length=247269 Score = 297 bits (328), Expect = 9e-76 Identities = 575/844 (68%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 65399 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 65458 ||| || | ||||| | | |||||| ||| ||||||||||| || | || | ||| Sbjct 173989 ATTTCCTCGGGCTCGCTGGGGCTGGACATCGCGCTGGGCATCGGTGGCTTGCCCAAGGGG 174048 Query 65459 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCG 65518 |||||| | || || ||||| || ||||| || || ||| |||| || || ||| Sbjct 174049 CGGGTGATCGAGATTTACGGGCCGGAATCCTCCGGCAAGACAACGCTGGCGCTGCACTGC 174108 Query 65519 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65578 ||||| | || |||||| || |||| | ||||| |||||| || || ||| | || Sbjct 174109 GTGGCTGAGGCCCAGAAGAAGGGCGGCATCTGCGCCTTCATCGATGCCGAACACGCGCTC 174168 Query 65579 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 65638 ||||| | || ||| |||||| || | |||| | || || | ||||| Sbjct 174169 GACCCGGTCTATGCCCGCAAGCTCGGCGTCAATGTCGATGAACTTCTGATTTCGCAGCCC 174228 Query 65639 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 65698 ||| ||||||||||| ||||| |||| ||| || || || |||| | ||| Sbjct 174229 GACCACGGCGAGCAGGCGCTGGAAATCGCCGACACGCTGGTGCGTTCCGGCGCG--GTCG 174286 Query 65699 ATCGTCG--TCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 65756 || | |||| ||||| ||||| || || |||||||||||||| ||||||||||| | Sbjct 174287 ATGTGCTGATCGTGGACTCGGTGGCAGCACTCGTGCCGCGCGCCGAACTCGAAGGCGAGA 174346 Query 65757 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 65816 | || || || | || ||||| ||||| || ||| ||||| |||||||||| | Sbjct 174347 TGGGCGATAGCCTTCCGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTGA 174406 Query 65817 CTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 65876 | | | ||| || || |||| || | ||| |||||||| | ||| ||||| Sbjct 174407 CCGCTTCGATCAACAAGTCCCACACCATGGTGATCTTCATCAACCAGATCCGCATGAAGA 174466 Query 65877 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 65936 |||| ||| |||||| || || |||||||| |||||||| || ||| ||||| Sbjct 174467 TCGGT---GTGATGTACGGCTCGCCGGAAACCACCACCGGCGGCAATGCGCTGAAGTTCT 174523 Query 65937 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAG-AAGGAAGGCGATGAGGCT 65995 |||| || || ||| | || |||| ||||||| | | || ||||| |||| || | Sbjct 174524 ACGCGTCCGTGCGCCTCGACATCCGCCGCATCGGC-CAGATCAAGGAGCGCGACGAAGTC 174582 Query 65996 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 66055 ||||||||| ||||| || ||||| || |||||||||||||| |||||| | | Sbjct 174583 GTCGGCAACTCGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCGTTCAAGCAG 174642 Query 66056 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 66115 | ||| ||| | || ||||||| |||||| ||||| || |||| | ||||| || Sbjct 174643 GTCGAATTCGACATCATGTACGGCGAGGGCGTCTCGAAGATGGGCGAAATTCTCGATCTC 174702 Query 66116 GCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAAC 66175 | ||| | ||| | || ||||||| |||||||||||| || | | || | Sbjct 174703 GGCGTCAAGGCCGGCATTGTCGAGAAGTCCGGCGCCTGGTTCTCCTATGACAGCCAGCGC 174762 Query 66176 GTCGCTCAGGGC------AAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATC 66229 ||| ||||||| || ||||||| || || ||||| ||||| || ||| Sbjct 174763 CTCGGTCAGGGCCGCGAAAACTCCAAGGC------GTTCCTGAAGGCGAACCCCGAAATC 174816 Query 66230 ACCG 66233 |||| Sbjct 174817 ACCG 174820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238056060043528