Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_008207.1 Length=153766 Score E Sequences producing significant alignments: (Bits) Value seq32030 100 3e-16 seq54433 86.0 6e-12 seq34751 84.2 2e-11 >seq32030 Length=166927 Score = 100 bits (110), Expect = 3e-16 Identities = 123/163 (75%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 112740 CCAAGCCCTGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACG 112799 ||||| | | || || ||| |||||||| ||||||| || |||||||||||| | | | Sbjct 85870 CCAAGGCATTCCCGT-CGGGCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTCGCGTGGG 85928 Query 112800 TCATGGGCATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCA 112859 || ||||||| |||| |||||||||| || |||| |||||||||||||| ||| Sbjct 85929 CGCTGACCATCACCGACCTCGATCCGATCAAGTTCGGCCTGCTGTTCGAGCGCTTCCTCA 85988 Query 112860 A-CCCGGAC-CGCCCCGACTTCCCCGACATCGACGTCGACTTC 112900 | |||| || || | ||| | || ||| ||||| |||| ||| Sbjct 85989 ATCCCGAACGCGTCTCGA--TGCCGGACTTCGACATCGATTTC 86029 >seq54433 Length=385573 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 112795 CTACGTCATGGGCATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTT 112854 |||||| | ||| |||||||| |||| |||| |||| ||| ||| ||||||||||||| Sbjct 275671 CTACGTGCTCGGCGTCACCTCGGTCGATCCGACCAAGGTCGATCTGCTGTTCGAGCGCTT 275612 Query 112855 CATCAACCCGGACCGCCCCGACTTCCCCGACATCGACGTCGACTTCCAGAAGTCG 112909 |||| | ||| || | || ||||||||||||||||| ||| || | ||| Sbjct 275611 CATCTCCAAGGAGCGGCTGGAGCCGCCCGACATCGACGTCGATTTCGAGCATTCG 275557 >seq34751 Length=230815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 112756 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 112815 ||| |||||||| || || | || ||||||||||| | |||| || ||| ||| Sbjct 179084 CGGGCCGGGCCGCGGTTCGGGCGCAGGCTCGCTGGTGGCTTACGCATTGACCATTACCGA 179025 Query 112816 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CCC 112873 |||| |||||| || || ||| |||||||||||||| |||| ||||| ||| | | Sbjct 179024 CCTCGATCCGATCCGGTTCGGTCTGCTGTTCGAGCGCTTCCTCAATCCGGAACGCGTCTC 178965 Query 112874 GACTTCCCCGACATCGACGTCGACTTC 112900 || | || ||| ||||| |||||||| Sbjct 178964 GA--TGCCGGACTTCGACATCGACTTC 178940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491574291172320