Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq55903 114 1e-20 seq55950 102 7e-17 seq45692 100 2e-16 seq47552 96.9 3e-15 seq54758 82.4 7e-11 >seq55903 Length=2024 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| | ||||| || |||| || |||| || ||||| Sbjct 1151 AACAATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTC 1092 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 | ||||| |||||| | |||||||| ||| ||||| || || ||||| ||||| Sbjct 1091 GAGCGACACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCTGA 1032 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || || || || | || || | || || ||| ||| || Sbjct 1031 TCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACGCTGGCCGACTA 972 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || |||||||| || | ||||| Sbjct 971 CAACATTCAGAAGGAGTCCACGCTCCACCTCGTGCT 936 >seq55950 Length=6881 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| | ||||| || |||| || |||| || ||||| Sbjct 1153 AACAATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTC 1094 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| |||||||||| ||| ||||| || || || || ||||| Sbjct 1093 CAGCGACACCATTGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 1034 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | || || | || || ||| ||| || Sbjct 1033 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACGCTGGCCGACTA 974 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || ||||| || || | ||||| Sbjct 973 CAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCT 938 >seq45692 Length=9336 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||||| Sbjct 5091 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 5032 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||||| || ||| ||||| || || || || ||||| || Sbjct 5031 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 4972 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | || || ||| || |||||| Sbjct 4971 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTGGCTGACTACAAT 4912 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || ||||| || || Sbjct 4911 ATTCAGAAGGAGTCCACCCTCCA 4889 >seq47552 Length=2045 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||||| ||||||| || || ||||| | || || || |||| || |||| || |||| Sbjct 1358 GAACA-TGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATTACCCTCGAGGTCGAGT 1416 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | |||||||||||| | ||||| || ||| ||||| || || || || |||| Sbjct 1417 CCAGCGACACTATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTG 1476 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || || |||||||| || | || || | |||||| | | ||| | Sbjct 1477 ATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACT 1536 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 |||| || || || || ||||| || || Sbjct 1537 ACAACATCCAGAAGGAGTCCACTCTCCA 1564 >seq54758 Length=5143 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||||| ||||||| || || ||||| | || || || |||| || |||| || |||| Sbjct 3786 GAACA-TGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATTACCCTCGAGGTCGAGT 3728 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | |||||||||||| | ||||| || ||| ||||| || || || || || | Sbjct 3727 CCAGCGACACTATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCG 3668 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||||| | || || || || || || | || || | || || ||| ||| | Sbjct 3667 ACCAGCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACGCTGGCCGACT 3608 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || || || || || || || | ||||| Sbjct 3607 ACAACATCCAGAAGGAGTCGACTCTCCACCTCGTGCT 3571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433028335000730