Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015-
01-07] 56,742 sequences; 103,482,825 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq47808 136 4e-27
seq47532 136 4e-27
seq38762 136 4e-27
seq38761 136 4e-27
>seq47808
Length=3094
Score = 136 bits (150), Expect = 4e-27
Identities = 408/622 (66%), Gaps = 11/622 (2%)
Strand=Plus/Plus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| || |||||| || | || ||||| || |||| ||| || ||||| | |
Sbjct 449 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 508
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaa 93209
|| || | || || || ||||||||||| || || || ||| || || || || || |
Sbjct 509 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGA 567
Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG--GAATTACT 93267
| || || || ||||| |||||| | | | || ||||| || | || | | ||
Sbjct 568 AGATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCT 627
Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326
| ||||||| || | ||||| ||||| || ||||| | | || | || ||||| |
Sbjct 628 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 687
Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386
|| || ||| || ||| ||||||| | ||| || ||||| | || || |
Sbjct 688 CGCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGT 747
Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446
|||| || || |||| ||||| || || || ||||| |||||||| || | || || |
Sbjct 748 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 807
Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506
| |||||| || | || | | |||| || ||| || ||||| ||| |
Sbjct 808 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGG 867
Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566
| || || || |||| | ||||| || || || |||| || | || ||| ||||
Sbjct 868 CGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCC 927
Query 93567 AATCGGATAGATCTTTTGAA---AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
| | | | || | ||| ||||||||||||||| ||||||| || || || || |
Sbjct 928 AGT--GCTTCATGTCG-GAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGG 984
Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAG 93683
| || |||||||| ||||| ||| || | | || || || | || || || || |
Sbjct 985 CCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAAGCGGTTGG 1044
Query 93684 GGTTATCTTTTAGTAACGGCTC 93705
|||| || | || | ||||||
Sbjct 1045 GGTTCTCCTCGAGCAGCGGCTC 1066
>seq47532
Length=3156
Score = 136 bits (150), Expect = 4e-27
Identities = 408/622 (66%), Gaps = 11/622 (2%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| || |||||| || | || ||||| || |||| ||| || ||||| | |
Sbjct 2708 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 2649
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaa 93209
|| || | || || || ||||||||||| || || || ||| || || || || || |
Sbjct 2648 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGA 2590
Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG--GAATTACT 93267
| || || || ||||| |||||| | | | || ||||| || | || | | ||
Sbjct 2589 AGATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCT 2530
Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326
| ||||||| || | ||||| ||||| || ||||| | | || | || ||||| |
Sbjct 2529 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 2470
Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386
|| || ||| || ||| ||||||| | ||| || ||||| | || || |
Sbjct 2469 CGCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGT 2410
Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446
|||| || || |||| ||||| || || || ||||| |||||||| || | || || |
Sbjct 2409 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 2350
Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506
| |||||| || | || | | |||| || ||| || ||||| ||| |
Sbjct 2349 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGG 2290
Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566
| || || || |||| | ||||| || || || |||| || | || ||| ||||
Sbjct 2289 CGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCC 2230
Query 93567 AATCGGATAGATCTTTTGAA---AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
| | | | || | ||| ||||||||||||||| ||||||| || || || || |
Sbjct 2229 AGT--GCTTCATGTCG-GAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGG 2173
Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAG 93683
| || |||||||| ||||| ||| || | | || || || | || || || || |
Sbjct 2172 CCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAAGCGGTTGG 2113
Query 93684 GGTTATCTTTTAGTAACGGCTC 93705
|||| || | || | ||||||
Sbjct 2112 GGTTCTCCTCGAGCAGCGGCTC 2091
>seq38762
Length=2104
Score = 136 bits (150), Expect = 4e-27
Identities = 408/622 (66%), Gaps = 11/622 (2%)
Strand=Plus/Plus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| || |||||| || | || ||||| || |||| ||| || ||||| | |
Sbjct 1280 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1339
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaa 93209
|| || | || || || ||||||||||| || || || ||| || || || || || |
Sbjct 1340 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGA 1398
Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG--GAATTACT 93267
| || || || ||||| |||||| | | | || ||||| || | || | | ||
Sbjct 1399 AGATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCT 1458
Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326
| ||||||| || | ||||| ||||| || ||||| | | || | || ||||| |
Sbjct 1459 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 1518
Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386
|| || ||| || ||| ||||||| | ||| || ||||| | || || |
Sbjct 1519 CGCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGT 1578
Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446
|||| || || |||| ||||| || || || ||||| |||||||| || | || || |
Sbjct 1579 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1638
Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506
| |||||| || | || | | |||| || ||| || ||||| ||| |
Sbjct 1639 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGG 1698
Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566
| || || || |||| | ||||| || || || |||| || | || ||| ||||
Sbjct 1699 CGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCC 1758
Query 93567 AATCGGATAGATCTTTTGAA---AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
| | | | || | ||| ||||||||||||||| ||||||| || || || || |
Sbjct 1759 AGT--GCTTCATGTCG-GAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGG 1815
Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAG 93683
| || |||||||| ||||| ||| || | | || || || | || || || || |
Sbjct 1816 CCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAAGCGGTTGG 1875
Query 93684 GGTTATCTTTTAGTAACGGCTC 93705
|||| || | || | ||||||
Sbjct 1876 GGTTCTCCTCGAGCAGCGGCTC 1897
>seq38761
Length=2091
Score = 136 bits (150), Expect = 4e-27
Identities = 408/622 (66%), Gaps = 11/622 (2%)
Strand=Plus/Plus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| || |||||| || | || ||||| || |||| ||| || ||||| | |
Sbjct 1267 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1326
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaa 93209
|| || | || || || ||||||||||| || || || ||| || || || || || |
Sbjct 1327 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGA 1385
Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG--GAATTACT 93267
| || || || ||||| |||||| | | | || ||||| || | || | | ||
Sbjct 1386 AGATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCT 1445
Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326
| ||||||| || | ||||| ||||| || ||||| | | || | || ||||| |
Sbjct 1446 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 1505
Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386
|| || ||| || ||| ||||||| | ||| || ||||| | || || |
Sbjct 1506 CGCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGT 1565
Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446
|||| || || |||| ||||| || || || ||||| |||||||| || | || || |
Sbjct 1566 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1625
Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506
| |||||| || | || | | |||| || ||| || ||||| ||| |
Sbjct 1626 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGG 1685
Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566
| || || || |||| | ||||| || || || |||| || | || ||| ||||
Sbjct 1686 CGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCC 1745
Query 93567 AATCGGATAGATCTTTTGAA---AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
| | | | || | ||| ||||||||||||||| ||||||| || || || || |
Sbjct 1746 AGT--GCTTCATGTCG-GAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGG 1802
Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAG 93683
| || |||||||| ||||| ||| || | | || || || | || || || || |
Sbjct 1803 CCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAAGCGGTTGG 1862
Query 93684 GGTTATCTTTTAGTAACGGCTC 93705
|||| || | || | ||||||
Sbjct 1863 GGTTCTCCTCGAGCAGCGGCTC 1884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556465832556080
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