Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq55903 102 6e-17 seq33787 98.7 8e-16 seq55950 93.3 3e-14 seq54362 84.2 2e-11 seq47552 82.4 6e-11 >seq55903 Length=2024 Score = 102 bits (112), Expect = 6e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || |||||| |||||||||||||||||| || |||| || Sbjct 930 AGACGGAGCACGAGGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGCGTACGG 989 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||| || || || || |||||||||||||| || | || ||| Sbjct 990 CCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGGGGGAATGCCCTCC 1049 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || |||||||| | | ||| | | || | || ||| |||| || Sbjct 1050 TTGTCCTGGATCTTTTGCTTGA-CGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGT 1108 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || ||||| || || ||||| |||||||||||| || Sbjct 1109 AATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCATTGTT 1151 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | ||| || ||||| || || || ||| |||||||||||||||||| || Sbjct 248 GAAGCCACCGCGCAGACGAAGCACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 307 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 || | || |||| || | ||||||||||| || || || ||||||||||| Sbjct 308 GGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCGGG 367 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 || | || ||| |||||| || || ||||| Sbjct 368 AGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 400 >seq33787 Length=3970 Score = 98.7 bits (108), Expect = 8e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || ||||| || || ||| ||||||||| |||||||| || |||| || Sbjct 3925 AGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTACGG 3866 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| || ||| | || ||| Sbjct 3865 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 3806 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | || | || ||| |||| ||| Sbjct 3805 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCGCTGGACTCGACCTCGAGCGT 3747 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || ||||| || || ||||| ||||| |||||| || Sbjct 3746 GATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 3704 >seq55950 Length=6881 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || || ||| ||||||||| |||||||| || |||| || Sbjct 932 AGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTACGG 991 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| || || || || ||||||||||| || | || ||| Sbjct 992 CCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCC 1051 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || |||||||| | | ||| | | || | || ||| |||| || Sbjct 1052 TTGTCCTGGATCTTTTGCTTCA-CGTTCTCAATGGTGTCGCTGGACTCGACCTCGAGGGT 1110 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || ||||| || || ||||| |||||||||||| || Sbjct 1111 AATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCATTGTT 1153 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || ||| |||||||||||||||||| || || | || Sbjct 704 AGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTGCGA 763 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||| ||||| || || || |||||||| || ||| | || ||| Sbjct 764 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGACGCTGCTGGTCGGGCGGAATGCCCTCC 823 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | || | || ||| |||| || Sbjct 824 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGT 882 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || ||||| ||||||||||| Sbjct 883 AATCGTCTTACCGGTGAGGGTCTTCACGAAGATTTGCAT 921 >seq54362 Length=8978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||| || |||||||| ||| ||||||||| ||||||||||| || Sbjct 4332 CCGCCACGCAGTCGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCG 4391 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| || || || || ||||||||||| || || Sbjct 4392 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 4451 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||||| | | ||| | | || | || ||| Sbjct 4452 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTCGACTCGAC 4510 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || ||||| || || || || || || || ||||| ||||| Sbjct 4511 CTCGAGAGTAATTGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 4558 >seq47552 Length=2045 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || ||| ||||||||| |||||||| || || | || Sbjct 1579 AGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 1520 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || || ||||||||||| || | || ||| Sbjct 1519 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCC 1460 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | | || | || ||| |||| || Sbjct 1459 TTGTCCTGGATCTTCTGCTTGA-CGTTCTCGATAGTGTCGCTGGACTCGACCTCGAGGGT 1401 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || || || || || || || ||||| ||||||||||| || Sbjct 1400 AATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCATGTT 1359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396787814227084