Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq54303 140 1e-28 seq55957 118 3e-22 >seq54303 Length=793959 Score = 140 bits (154), Expect = 1e-28 Identities = 197/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 42713 CCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCG 42772 ||||| | | |||||| |||| | | ||||||||| || || ||| ||||||| Sbjct 29195 CCGCCCACGGTCGGCACGCCGAAGGAATTGCCGTAGCCGCCGACGCCCGCCACGACGCCG 29136 Query 42773 TGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACC 42832 |||| || ||| | |||| |||| ||||||||||| || || | | | Sbjct 29135 GAGACGAGATGCCGCGTCTTCGGGTGCTCGGGCGCGCCGAAGCTGAGCGCATTGAGGCAG 29076 Query 42833 GCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCC 42892 |||| ||||| |||||||||| || | |||||| | ||| ||||| || || |||| | Sbjct 29075 GCGATGGGGCGCGCGCCCATGGTGAACACGTCGCGCAAGATACCGCCGACGCCGGTCGTC 29016 Query 42893 GCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACC 42952 |||||||| |||||||||| | ||||||||||| |||||| |||||| || Sbjct 29015 GCGCCCTGATAGGGCTCGATATAGCTCGGGTGGTTGTGGCTCTCCATCTTGAAGACCACG 28956 Query 42953 GCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT 42989 ||| || ||||||| |||||| ||||| || |||| Sbjct 28955 GCCTGGCCATCGCCGATGTCGATCACGCCGGCATTCT 28919 >seq55957 Length=247269 Score = 118 bits (130), Expect = 3e-22 Identities = 138/184 (75%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 42807 CGCCGAAGCGCAGGGCGTCCATGACCG-CGACCGGGCGAGCGCCCATGGAGATGATGTCG 42865 ||||||| | ||| |||| | ||| | | | |||||| |||||||||| || | |||| Sbjct 195842 CGCCGAAACTCAGAGCGTTGA-GACAGGCAATCGGGCGCGCGCCCATGGTGAAAACGTCG 195784 Query 42866 CGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGG 42925 || | |||||||| ||||| || | ||||||||| | ||||||||| | ||||| Sbjct 195783 CGCAGAATGCCGCCAACACCAGTGGTCGCGCCCTGATACGGCTCGATGTAGCTCGGGTGA 195724 Query 42926 TTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCG 42985 ||||| |||||| |||||| ||||| || ||||||| |||||||||||||| Sbjct 195723 TTGTGGCTCTCCATCTTGAAGACCACCGCAAGGCCGTCGCCGATATCGATGACGCCCGCA 195664 Query 42986 TTCT 42989 |||| Sbjct 195663 TTCT 195660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148146509907908