Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_009604.1 Length=47382 Score E Sequences producing significant alignments: (Bits) Value seq34751 91.5 4e-14 >seq34751 Length=230815 Score = 91.5 bits (100), Expect = 4e-14 Identities = 283/426 (66%), Gaps = 23/426 (5%) Strand=Plus/Minus Query 11325 TCGTACCAGACGCGAATCTCGCCTTCGCTCGATGCG-TTCAAGCCGGTCGGCGTGATACC 11383 ||||| | ||||| |||||| || || ||| |||| ||| ||||| || || Sbjct 123440 TCGTAGAAAACGCGGATCTCGGGCTCTG-CGGTGCCATTCAGACCGTGCGGCGATATGCC 123382 Query 11384 GAGCAGCTTGATCAGCGGAATGTGCGAGACGGCGCTCATCTGCTCCTGGGCCTGGGCCTG 11443 ||||||||||| |||||||||| | |||||| ||| || ||||| ||||| ||||| Sbjct 123381 GAGCAGCTTGACCAGCGGAATGCGGCTGACGGCCGCCATGTGTTCCTGTGCCTGAGCCTG 123322 Query 11444 CAGTGCGTCGAGCCCGGATAGCGG---CGTGTTGAACTGGAAGAATTCTTCCGTCGCCTT 11500 ||||||||| ||| |||||| || | | ||| |||||| || | |||| Sbjct 123321 CAGTGCGTCCAGCGTTCCTAGCGGAGCCGCGACGTTCTG---GAATTCCTCGCTTTCCTT 123265 Query 11501 GTCGAGGAAAAGAATGTTCCGGTTGTCGCGATAGCGGTTGATCAGCTCGGCGCGCATCGA 11560 ||| || | | | || |||| ||| | ||||| ||| ||| |||| |||| Sbjct 123264 GTCCAGCACCATCGTCCCGCGATTGTTGCGGATGTTGTTGAACAGGTCGACGCG-GTCGA 123206 Query 11561 CAAATCGACGTTCGCGCCGGGCATCAACGCCTGCGCGAGGTCCATCAAGATGCCCGACAC 11620 ||| | |||| | ||| | | | | |||| |||| | ||| ||| Sbjct 123205 -AAAGC-TCGTTACCCTGCGGCGAC-AGGTCGGCGC-----CCATGTTGGTGCTGAGCAC 123154 Query 11621 G----CTGA-ACTG-CTTGACGATGTCCGACACCGACTGGCGTGTGCGCAGCCAGTTGTC 11674 | |||| | || || ||||||||| | || |||||| || ||||||||||| Sbjct 123153 GAAGACTGAGAATGCCTGGACGATGTCGGCAACGCTCTGGCGCACGCCGAGCCAGTTGTC 123094 Query 11675 GATGTACGGCATCGCGAGCTGCGTCATGCTGATGCCGGCGAACGAATACGTCGGCTTGAG 11734 || || ||| | || | ||| | |||| || ||| |||||| || | ||||||||| Sbjct 123093 GACATAGGGCTTGGCCATCTGGGACATGGCGAGACCGCCGAACGCGTATGCCGGCTTGAG 123034 Query 11735 CATGTC 11740 |||||| Sbjct 123033 CATGTC 123028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151398717056576