Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq47808 131 4e-25 seq47532 131 4e-25 seq38762 131 4e-25 seq38761 131 4e-25 >seq47808 Length=3094 Score = 131 bits (144), Expect = 4e-25 Identities = 294/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || || | || ||||| || |||||| ||||||| ||||| ||| || Sbjct 581 CGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 522 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | ||||| ||||||| | ||||||| | ||||| |||||||||||||| ||| Sbjct 521 CCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGACGAGGGCCTCCACTG 462 Query 243438 ACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAA 243497 | |||| || | || | | |||| ||||||| | ||| | ||| Sbjct 461 CGACTTCGCCTGCCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCGATGTGCCCAA 402 Query 243498 ACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCA 243555 || |||||| || || || || | || ||||||||| | ||| |||| | || Sbjct 401 GCAGATCATCCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTCACCGAATCGCT-TCCCG 343 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 || | || || ||||||||| | || |||||| | ||||||||||| ||||| |||||| Sbjct 342 TGGCC-CTCATCGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGAC 284 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | || || || || | ||||| |||||| | ||||| || | | Sbjct 283 CGCCTGCTCGCTGCCCTCGGATGCGAGAAGCACTACAACCAGACCAACCCGTTCCCGTGG 224 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTAT 243735 ||||||||||| || || | || || || |||||||||||| || ||| | || ||| Sbjct 223 ATGGAGCTCATCTCCCTCGAGGGCAAGACCAACTTCTTCGAACGCCGCGTCGGCGAGTAT 164 Query 243736 --CAACGCCCTGGTGT 243749 ||| ||| ||||| Sbjct 163 GCCAAGGCC--GGTGT 150 >seq47532 Length=3156 Score = 131 bits (144), Expect = 4e-25 Identities = 294/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || || | || ||||| || |||||| ||||||| ||||| ||| || Sbjct 2576 CGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 2635 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | ||||| ||||||| | ||||||| | ||||| |||||||||||||| ||| Sbjct 2636 CCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGACGAGGGCCTCCACTG 2695 Query 243438 ACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAA 243497 | |||| || | || | | |||| ||||||| | ||| | ||| Sbjct 2696 CGACTTCGCCTGCCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCGATGTGCCCAA 2755 Query 243498 ACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCA 243555 || |||||| || || || || | || ||||||||| | ||| |||| | || Sbjct 2756 GCAGATCATCCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTCACCGAATCGCT-TCCCG 2814 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 || | || || ||||||||| | || |||||| | ||||||||||| ||||| |||||| Sbjct 2815 TGGCC-CTCATCGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGAC 2873 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | || || || || | ||||| |||||| | ||||| || | | Sbjct 2874 CGCCTGCTCGCTGCCCTCGGATGCGAGAAGCACTACAACCAGACCAACCCGTTCCCGTGG 2933 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTAT 243735 ||||||||||| || || | || || || |||||||||||| || ||| | || ||| Sbjct 2934 ATGGAGCTCATCTCCCTCGAGGGCAAGACCAACTTCTTCGAACGCCGCGTCGGCGAGTAT 2993 Query 243736 --CAACGCCCTGGTGT 243749 ||| ||| ||||| Sbjct 2994 GCCAAGGCC--GGTGT 3007 >seq38762 Length=2104 Score = 131 bits (144), Expect = 4e-25 Identities = 294/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || || | || ||||| || |||||| ||||||| ||||| ||| || Sbjct 1412 CGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 1353 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | ||||| ||||||| | ||||||| | ||||| |||||||||||||| ||| Sbjct 1352 CCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGACGAGGGCCTCCACTG 1293 Query 243438 ACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAA 243497 | |||| || | || | | |||| ||||||| | ||| | ||| Sbjct 1292 CGACTTCGCCTGCCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCGATGTGCCCAA 1233 Query 243498 ACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCA 243555 || |||||| || || || || | || ||||||||| | ||| |||| | || Sbjct 1232 GCAGATCATCCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTCACCGAATCGCT-TCCCG 1174 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 || | || || ||||||||| | || |||||| | ||||||||||| ||||| |||||| Sbjct 1173 TGGCC-CTCATCGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGAC 1115 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | || || || || | ||||| |||||| | ||||| || | | Sbjct 1114 CGCCTGCTCGCTGCCCTCGGATGCGAGAAGCACTACAACCAGACCAACCCGTTCCCGTGG 1055 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTAT 243735 ||||||||||| || || | || || || |||||||||||| || ||| | || ||| Sbjct 1054 ATGGAGCTCATCTCCCTCGAGGGCAAGACCAACTTCTTCGAACGCCGCGTCGGCGAGTAT 995 Query 243736 --CAACGCCCTGGTGT 243749 ||| ||| ||||| Sbjct 994 GCCAAGGCC--GGTGT 981 >seq38761 Length=2091 Score = 131 bits (144), Expect = 4e-25 Identities = 294/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || || | || ||||| || |||||| ||||||| ||||| ||| || Sbjct 1399 CGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 1340 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | ||||| ||||||| | ||||||| | ||||| |||||||||||||| ||| Sbjct 1339 CCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGACGAGGGCCTCCACTG 1280 Query 243438 ACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAA 243497 | |||| || | || | | |||| ||||||| | ||| | ||| Sbjct 1279 CGACTTCGCCTGCCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCGATGTGCCCAA 1220 Query 243498 ACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCA 243555 || |||||| || || || || | || ||||||||| | ||| |||| | || Sbjct 1219 GCAGATCATCCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTCACCGAATCGCT-TCCCG 1161 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 || | || || ||||||||| | || |||||| | ||||||||||| ||||| |||||| Sbjct 1160 TGGCC-CTCATCGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGAC 1102 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | || || || || | ||||| |||||| | ||||| || | | Sbjct 1101 CGCCTGCTCGCTGCCCTCGGATGCGAGAAGCACTACAACCAGACCAACCCGTTCCCGTGG 1042 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTAT 243735 ||||||||||| || || | || || || |||||||||||| || ||| | || ||| Sbjct 1041 ATGGAGCTCATCTCCCTCGAGGGCAAGACCAACTTCTTCGAACGCCGCGTCGGCGAGTAT 982 Query 243736 --CAACGCCCTGGTGT 243749 ||| ||| ||||| Sbjct 981 GCCAAGGCC--GGTGT 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102078198657700