Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq55600 107 7e-19 seq24082 84.2 8e-12 >seq55600 Length=68428 Score = 107 bits (118), Expect = 7e-19 Identities = 112/146 (77%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 5615 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5674 || ||||||||||| ||||||| ||| ||||| ||||| || ||||| |||||||||||| Sbjct 47720 GACGAGTTCGACTACGGCTATGTGCTGACCGTGCACAAATCCCAGGGTTCCCAGTGGAAC 47661 Query 5675 AACGTCCTGCTGTTTGACGAGTGGTACG---GGAAGGA---CCGGAAGGAATGGCTGTAC 5728 ||||| ||||||| |||||| | | || |||| ||| ||||| ||| Sbjct 47660 GACGTCGTGCTGTTCGACGAGAGCTTCGCCTTCCAGGACAGCCGCGCCCGCTGGCTCTAC 47601 Query 5729 ACCGCCATTACCCGGGCCGCGGAACG 5754 |||| ||||||||| |||||| |||| Sbjct 47600 ACCGGCATTACCCGCGCCGCGAAACG 47575 Score = 86.0 bits (94), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 5066 TTCGGTTGCCCGATCCTCGCCCTGGGCGATCCGGGGCAGCTCCCGCCCGT---GGGCGGC 5122 |||| ||||||| | || | ||||||||||||| |||| | ||||| | ||||||| Sbjct 48278 TTCGATTGCCCGCTGCTGGTGCTGGGCGATCCGGCGCAGTTGCCGCCGATTCAGGGCGGC 48219 Query 5123 ACCCCCTTCTTCAAGAACAAGCCCGACATCCTGCTCACGGAGATTCACCGCCAGGCCCAG 5182 | ||| | | | |||| || |||| |||||| |||| || ||||| ||| Sbjct 48218 GGCTTTTTCACCGATGCCGAGCCGGATGCGATGCTGACGGAGGTTCATCGTCAGGCACAG 48159 Query 5183 GACAACCCGATCATCTGGATGTCCAAGGAGGTCCGCGAGGGCCGCGTGCTC 5233 ||| | ||||| | ||||||| | || ||| ||||| ||||||| |||| Sbjct 48158 GACGATCCGATTGTGCGGATGTCGATGGCGGTGCGCGAAGGCCGCGCGCTC 48108 Score = 80.6 bits (88), Expect = 1e-10 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 4648 GCCCGTGTTCCAGCTCGCCGGGTACGCCGGAACCGGCAAGACCACCCTGGCCAAACACCT 4707 ||| ||||||| ||| ||| || ||||| |||||||||||||||||||| || | Sbjct 48582 GCCGGTGTTCCGGCTGTTCGGCTATGCCGGCACCGGCAAGACCACCCTGGCGCGGCATAT 48523 Query 4708 CGCCGCGACCGTCAACGGTCCCGTGTACTTTGCCGCCTACACCGGCAAGGCCGC 4761 ||| | ||||||||| |||| | || || || | ||||||||||||||| Sbjct 48522 CGCGGACGGCGTCAACGGCAACGTGAAATTCGCAGCGTTCACCGGCAAGGCCGC 48469 >seq24082 Length=208990 Score = 84.2 bits (92), Expect = 8e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 5615 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5674 || |||||||| || ||||| | ||| ||||| ||||||||||||||||| || ||| || Sbjct 157970 GACGAGTTCGATTACGGCTACGTGCTGACCGTGCACAAGTCGCAGGGCTCGCAATGGGAC 157911 Query 5675 AACGTCCTGCTGTTTGACGAG 5695 | ||| ||||||| |||||| Sbjct 157910 GATGTCGTGCTGTTCGACGAG 157890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187473593009500