Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq55957 268 4e-67 seq54303 260 7e-65 >seq55957 Length=247269 Score = 268 bits (296), Expect = 4e-67 Identities = 481/696 (69%), Gaps = 9/696 (1%) Strand=Plus/Plus Query 65907 GACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCG 65966 || || ||| || | |||||| | | |||||| ||| || |||||||| || | || Sbjct 173983 GAGACGATTTCCTCGGGCTCGCTGGGGCTGGACATCGCGCTGGGCATCGGTGGCTTGCCC 174042 Query 65967 AGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTC 66026 | ||| ||||| | ||||| ||||| || || || || || ||| ||||| || || Sbjct 174043 AAGGGGCGGGTGATCGAGATTTACGGGCCGGAATCCTCCGGCAAGACAACGCTGGCGCTG 174102 Query 66027 CACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACAT 66086 ||| ||||| | ||||||||| || |||| | ||||| |||||| |||||||| Sbjct 174103 CACTGCGTGGCTGAGGCCCAGAAGAAGGGCGGCATCTGCGCCTTCATCGATGCCGAACAC 174162 Query 66087 TCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTG 66146 | |||||||| | || ||| |||||| || ||||||| | || || || | Sbjct 174163 GCGCTCGACCCGGTCTATGCCCGCAAGCTCGGCGTCAATGTCGATGAACTTCTGATTTCG 174222 Query 66147 CAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAG 66206 ||||| ||| ||||||||||| ||||| |||| ||| || || || |||| | Sbjct 174223 CAGCCCGACCACGGCGAGCAGGCGCTGGAAATCGCCGACACGCTGGTGCGTTCCGGCGCG 174282 Query 66207 GTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGG 66266 || | | | |||||||| ||||| || || |||||||| || || |||||||| Sbjct 174283 GTCGATGTGCTGATCGTGGACTCGGTGGCAGCACTCGTGCCGCGCGCCGAACTCGAAGGC 174342 Query 66267 GACATCGGGGACTCGCACGTC--GGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCA 66324 || || || || | || | || || ||||| || || |||||| ||||| |||||| Sbjct 174343 GAGATGGGCGA-TAGC-CTTCCGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCA 174400 Query 66325 AGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCG 66384 ||||||||| |||| || || |||| | | | | || ||| | ||| Sbjct 174401 AGCTGACCGCTTCGATCAACAAGTCCCACACCATGGTGATCTTCATCAACCAGATCCGCA 174460 Query 66385 AGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGC 66444 ||||||||| ||| |||||| || || ||||||||||| || || || ||| Sbjct 174461 TGAAGATCGG---TGTGATGTACGGCTCGCCGGAAACCACCACCGGCGGCAATGCGCTGA 174517 Query 66445 GCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGA-GAAGGAAGGCGAT 66503 |||||||| || ||||| | || ||||| | |||| | | || ||||| |||| Sbjct 174518 AGTTCTACGCGTCCGTGCGCCTCGACATCCGCCGCATCGGC-CAGATCAAGGAGCGCGAC 174576 Query 66504 GAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCAC 66563 || | ||||||||| || ||||| ||||| || ||||||||||||||||| ||| | Sbjct 174577 GAAGTCGTCGGCAACTCGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCGTTC 174636 Query 66564 CGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGC 66599 |||| || || |||| | |||||||||||| Sbjct 174637 AAGCAGGTCGAATTCGACATCATGTACGGCGAGGGC 174672 >seq54303 Length=793959 Score = 260 bits (288), Expect = 7e-65 Identities = 499/734 (68%), Gaps = 11/734 (1%) Strand=Plus/Plus Query 65942 CGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTC 66001 ||| ||||||||||| || || | ||| || || || ||||||||||| || || || Sbjct 1519 CGCGCTCGGCATCGGCGGCCTGCCCAAGGGGCGTGTCGTCGAGATCTACGGGCCGGAATC 1578 Query 66002 TTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAA 66061 || || ||| | ||| || || || ||||||| | || |||||| || |||| Sbjct 1579 GTCGGGCAAGACGACGCTGGCGCTGCATACGGTGGCGGAGGCGCAGAAGAAGGGCGGCAT 1638 Query 66062 CGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGT 66121 ||||| ||||||||||| || | |||||||| | || ||| ||| || || Sbjct 1639 TTGCGCCTTTATCGACGCCGAGCACGCGCTCGACCCGGTCTATGCCCGCAAGCTGGGCGT 1698 Query 66122 GGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGT 66181 | ||||| | || || | |||||| ||||| ||||||||||| ||||||||| Sbjct 1699 CAACATCGACGAGCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGGCGCTGGAGATCTG 1758 Query 66182 TGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCT 66241 ||| | || || || | || | | |||| || || || || ||||| || Sbjct 1759 CGACACCTTGGTGCGCTCCGGTGCCGTCGACGTTCTCGTGGTCGATTCGGTCGCGGCGCT 1818 Query 66242 GGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCG 66301 ||||||| ||| |||||||| || || || || ||| ||| |||||||| ||||| Sbjct 1819 GGTGCCGAAGGCCGAGCTCGAGGGCGAGATGGGCGACGCGCTGCCGGGCCTGCAGGCCCG 1878 Query 66302 CCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCAC 66361 | ||||| ||||| | |||||||| || | | | || || |||||||| | Sbjct 1879 CTTGATGAGCCAGGCGCTACGCAAGCTCACGGCCTCCATCAACAAGTCCAACACGATGGT 1938 Query 66362 CCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGAC 66421 | | | || ||| | ||| |||||||||| ||| |||||| || ||| || Sbjct 1939 GATCTTCATCAACCAGATCCGCATGAAGATCGGC---GTGATGTACGGCTCGCCTGAAAC 1995 Query 66422 CACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGAT 66481 |||||||| || || || ||| ||||||||||| || || | || ||||| | || Sbjct 1996 GACCACCGGCGGCAATGCGCTGAAATTCTACGCCTCAGTCCGCCTCGACATCCGCCGCAT 2055 Query 66482 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAA 66541 || | | ||||| | || |||| ||||||||| ||||||||| ||||| || || Sbjct 2056 CGGCGCGATCAAGGAGCGTGACGAGGTGGTCGGCAACACCACGCGCGTCAAGGTGGTGAA 2115 Query 66542 GAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601 ||||||||||||||| || | ||| ||||| |||| | |||||||||||| | Sbjct 2116 GAACAAGCTGGCGCCGCCCTTCAAGCAGATCGAGTTCGACATCATGTACGGCGAGGGCGT 2175 Query 66602 TTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTTCCCGAGGGC----TCATCAAGAAGT 66657 ||| || ||| ||||||| | | ||| | ||| | || || |||||| Sbjct 2176 CTCCAAGATGGGTGAGATCCTCGATCTCGGCGT----CAAGGCCGGCATCGTCGAGAAGT 2231 Query 66658 CTGGGGCCTGGTTC 66671 | || ||||||||| Sbjct 2232 CCGGCGCCTGGTTC 2245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242302721261864