Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq54446 93.3 4e-14 seq32030 89.7 5e-13 seq55600 84.2 2e-11 seq54303 84.2 2e-11 >seq54446 Length=153271 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||||||||||| |||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 25763 GCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 25704 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 25703 CCTGCCCCCGCAAC 25690 >seq32030 Length=166927 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 110993 CGGCCCTGGCCGTGGCTCCGGCGGCGGCTCGCTGGTGAACTACCTGCTGGGCATCACCTC 111052 ||| || ||||| |||||||||| |||||||||||| | |||| ||||||| Sbjct 85885 CGGGCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTCGCGTGGGCGCTGACCATCACCGA 85944 Query 111053 GCTCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106 ||||| |||||||||| || |||| ||||||||| ||| |||| ||||| || Sbjct 85945 CCTCGATCCGATCAAGTTCGGCCTGCTGTTCGAGCGCTTCCTCAATCCCGAACG 85998 >seq55600 Length=68428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| ||| | | ||||||||| Sbjct 11146 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 11205 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 11206 CCTATCCCCGCAAC 11219 >seq54303 Length=793959 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| ||| | | ||||||||| Sbjct 374789 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 374730 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 374729 CCTATCCCCGCAAC 374716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526224896919840