Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq55950 91.5 1e-13 seq18839 84.2 2e-11 >seq55950 Length=6881 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || ||||| || || || || ||| | Sbjct 695 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 754 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || || | || || || ||| | || | || |||||||| |||||| Sbjct 755 AGCGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGACGCTGCTGGTCGGGCGGA 814 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | |||||| |||||||| Sbjct 815 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGAC 873 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 |||||||||| ||| || ||||| || || || || || |||||||| ||| || || Sbjct 874 CTCGAGAGTAATCGTCTTACCGGTGAGGGTCTTCACGAAGATTTGCATACCGCCACGAA 932 >seq18839 Length=217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || |||||||| || ||||||||||| || || || || Sbjct 44 TGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATC 103 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || |||| || | || | |||||| |||||||| ||||| || | ||| ||||| Sbjct 104 TTCTGCTTGA-CGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATCGTCTTGCC 162 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 ||| || || || || || || ||||| ||| || || Sbjct 163 GGTCAGCGTCTTGACGAAGATCTGCATACCGCCACGAA 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451682605430320