Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq29645 89.7 1e-13 seq24986 86.0 2e-12 >seq29645 Length=124085 Score = 89.7 bits (98), Expect = 1e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 8878 GCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAAT 8937 || ||||| || |||||||||||||||||| |||||| | || | |||| || Sbjct 58291 GCCAAGGAGCTGAGCGTTCCGATCATCGCGCTCTCGCAGTTGTCGCGTCAGGTCGAAAAC 58350 Query 8938 CGCCCAAACAAGCGGCCCGTCA-TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGA 8996 ||| | |||||| ||||| | ||||||| ||||||| || || ||||||| ||||| Sbjct 58351 CGCGAAGACAAGC-GCCCGCAACTGTCCGACTTGCGCGAATCCGGATCGATCGAACAGGA 58409 Query 8997 TGCCGACGTGATCCTCTTTATCTACCGCGATGA 9029 |||||||| | || || |||| ||||| || Sbjct 58410 CGCCGACGTCGTGCTGTTCGTCTATCGCGAGGA 58442 >seq24986 Length=52538 Score = 86.0 bits (94), Expect = 2e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 8878 GCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAAT 8937 |||||||| ||| |||| || |||||||| || || ||||| || ||||||||| Sbjct 6639 GCGAAGGAGCTCAACGTCCCCATCATCGCACTCTCCCAGCTCTCCCGCCTGCTCGAGAAC 6698 Query 8938 CGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGAT 8997 || | |||||||| |||| || |||||||| || ||| ||||||||||||| Sbjct 6699 CGGGAGGAGAAGCGGCCGCAATTGTCGGACCTGCGCGAATCCGGTTCGATCGAGCAGGAC 6758 Query 8998 GCCGACGTGATCCTCTT 9014 || |||||| | || || Sbjct 6759 GCGGACGTGGTGCTATT 6775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127459658339832