Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq30882 98.7 1e-15 seq53067 87.8 2e-12 seq24074 86.0 8e-12 >seq30882 Length=13493 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||| |||| ||||||||||| ||||| ||||||||||||| ||| | |||||| | Sbjct 1981 GGAAGGGTGGCCGAGTGGTTTAAGGCACCGGTCTTGAAAACCGGCGTGCCTGCAAGGGCA 1922 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 |||||||||| ||||||||| |||||| Sbjct 1921 CCGTGGGTTCGAATCCCACCCCTTCCG 1895 >seq53067 Length=62671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 141672 AAATAGGGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCA 141731 || || ||||| |||| ||| |||| | |||| ||||||||||||| || |||| ||| Sbjct 13949 AATTATGGAAGGGTGGCTGAGCGGTTGAAAGCACCGGTCTTGAAAACCGGCAAGGGGGCA 14008 Query 141732 AGTTCTCCGTGGGTTCAAATCCCACCTCTTCCG 141764 | | || ||||||||| ||||||||| |||||| Sbjct 14009 ACTCCTTCGTGGGTTCGAATCCCACCCCTTCCG 14041 >seq24074 Length=235507 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||| |||| |||| |||||| ||||| ||||||||||||| ||| | ||||| Sbjct 72296 GGAAGGGTGGCCGAGCGGTTTAAGGCACCGGTCTTGAAAACCGGCGTGCCCGCAAGGGTA 72237 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 |||||||||| ||||||||| |||||| Sbjct 72236 CCGTGGGTTCGAATCCCACCCCTTCCG 72210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609963860809680