Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq27440 107 6e-19 seq54491 102 3e-17 >seq27440 Length=426762 Score = 107 bits (118), Expect = 6e-19 Identities = 136/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| |||||| ||| |||||||| |||||| ||| ||||| |||||||||||||| | Sbjct 329292 ACGGCAAGCTGTCCTGTCAGCTCTATCAGCGCTCCGCCGACGTCTTCCTCGGCGTGCCCT 329351 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCT---CGGACTGA 24936 |||| ||||| |||| ||||||| ||| | | | || ||| | ||| |||| Sbjct 329352 TCAACATCGCCTCCTACTCGCTGCTCACC---ATGATGGTGGCGCAGGTCACCGGTCTGA 329408 Query 24937 AGGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGC 24996 || |||||| ||| | | |||||||| || || ||||| |||||| | |||| Sbjct 329409 AGCCCGGCGATTTCGTGCATTCGTTCGGCGACGCGCATCTCTATTCCAACCACCTGGAGC 329468 Query 24997 AGGCGA 25002 |||||| Sbjct 329469 AGGCGA 329474 >seq54491 Length=272697 Score = 102 bits (112), Expect = 3e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 ||||||| || |||||| || |||||||| ||||||||||| ||||||||||||| Sbjct 166153 ACGGAAAATTGTCCTGCCAACTGTACCAGCGTTCGGCGGACGTATTTCTCGGCGTGCCGT 166094 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| |||||| ||| |||||||||||| | | ||| | | || |||||| Sbjct 166093 TCAACATCGCGTCCTATGCGCTGCTGACCATGATGGTGGCGCAGGTGACTGGGCTGAAGC 166034 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 |||||| ||| | | |||||| | || || ||||||||||| |||| |||| Sbjct 166033 CCGGCGACTTCGTGCATTCGCTCGGCGATGCGCATCTCTATTCGAACCATCTCGATCAGG 165974 Query 25000 C 25000 | Sbjct 165973 C 165973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164062178520416