Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_016767.1 Length=60714 Score E Sequences producing significant alignments: (Bits) Value seq47259 172 2e-38 seq53101 95.1 5e-15 seq24986 95.1 5e-15 seq24987 86.0 2e-12 >seq47259 Length=37638 Score = 172 bits (190), Expect = 2e-38 Identities = 297/427 (70%), Gaps = 16/427 (4%) Strand=Plus/Minus Query 34397 TCTATAACGACCAGTTCAACACCGACGTTGCCCGCGACTTCGACGGCTCACACCTGACCT 34456 |||| ||||| ||||||||||| ||| |||| | ||||||||| ||||| || Sbjct 35301 TCTACAACGAAAAGTTCAACACCCGCGTCAACCGCCAGCACGACGGCTCCCACCTCGCCC 35242 Query 34457 TCCCCGGCAAGGTGAGCGACGACATCGTGAAGCTGCGCCCGCATCAGTCGAATTTCGTCT 34516 ||||||||||||| || || | | ||||| |||| || ||| ||| || | Sbjct 35241 TCCCCGGCAAGGTCCCGGATGAGGTGATCAAGCTCCGCCGCCACCAGAAGAACGCTGTGT 35182 Query 34517 GGCGCGTCGTGCAGGGTGGCACGTC--GCTGGCCGATCACGTCGTCGGTGCCGGCAAGAC 34574 |||||| | | | | || | || |||| ||| ||||||||||| ||||||||||| Sbjct 35181 GGCGCGGCATCTACGA--GCGCTTCATGCTGCTCGACCACGTCGTCGGCGCCGGCAAGAC 35124 Query 34575 GTTCTCGCTGGTGGCTTCCATCATGGAGCTGCGCCGCCTCGGACTGGCCCGCAAGCCTGT 34634 ||| | | | || | | ||||||| ||| || | || ||| |||||||||| Sbjct 35123 CTTCACCGCGATCGCGCGCGTGATGGAGCGGCGGCGGATGGGCCTGTCCCGCAAGCC--- 35067 Query 34635 CCTGACCGTG---CCGAACCATCTGGTAGGCCAGTGGGCTGCTGACTTCCTGAAGCTCTA 34691 | ||| |||| |||||||||||||| | ||||||| | || ||| || || || Sbjct 35066 CATGATCGTGGTGCCGAACCATCTGGTCGACCAGTGGACGGCGGACGTCTACCGCCTGTA 35007 Query 34692 TCCGGGCGCCAACGTGCTGGCCGCCTCGAAAGCCGATTTTG---AGAAGGGCAAGCGTCA 34748 ||||||||||| ||||| || ||| || | | || | |||||||| || | Sbjct 35006 CCCGGGCGCCAAGGTGCTCGCGGCCGGCAAGAACCAGTTCGAGAAGAAGGGC---CGCCG 34950 Query 34749 GCGCCTGTTCGCCCGCATCGCTACCGGCGATTGGGACGTGGTGATCGTGGCTCACTCTTC 34808 || ||||||||| ||||| || || ||||||||||| || ||||| | || || || Sbjct 34949 CCGGCTGTTCGCCAAGATCGCGACGGGAGATTGGGACGTCGTCATCGTCCCGCATTCCTC 34890 Query 34809 CTTCGGC 34815 |||||| Sbjct 34889 GTTCGGC 34883 Score = 105 bits (116), Expect = 3e-18 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 36000 CTACGATGACCTGAAGCAGAAGCTCATCGACCGGGGCATCCCAGAGGCCGAGATCGCCTT 36059 |||||| | || ||| || || | || ||| |||||||| | | ||| ||| ||| Sbjct 33683 CTACGACCAGCTCAAGGCTAACCTGACCGCCCGCGGCATCCCTGCCGACGAAATCCGCTT 33624 Query 36060 CATCCACGACGCGAACACCGAGCTTCAGAAAGAAGAGCTGTTCGGCAAGGTCCGCACCGG 36119 | | || || || |||| || |||| | | ||||||| | || | ||| Sbjct 33623 CGTGCAGGAGGCCAACAATGACGCCGAGAAGAAGGCCCTGTTCGACGCAGTGAACGACGG 33564 Query 36120 CCGCGTCCGCGTCCTGTTCGGCTCCACGGCTAAGATGGGTGCCGGCATGAACGTGCAAAA 36179 | ||| || || ||| ||||||| || | ||||| ||||||| |||||||| | Sbjct 33563 CACCGTGCGGGTGCTGATCGGCTCGACCCCGCGCATGGGCGCCGGCACCAACGTGCAGGA 33504 Query 36180 CAGGCTGGTGGCTCTCCACCACCTCGACGCACCATGGCGCCCGTCTGACCTCGAACAGCG 36239 |||| || || |||||||| ||||| | ||| || || ||| |||| ||||| Sbjct 33503 GCGGCTTGTCGCCCTCCACCATGGCGACGTGACGTGGAAGCCCTCCGACATCGAGCAGCG 33444 Query 36240 CGAGGGCCGCATCATCCGTCAGGGTAACGAGCT 36272 ||| |||||||||||||| ||||| ||| |||| Sbjct 33443 CGAAGGCCGCATCATCCGCCAGGGCAACAAGCT 33411 >seq53101 Length=121849 Score = 95.1 bits (104), Expect = 5e-15 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 36097 CTGTTCGGCAAGGTCCGCACCGGCCGCGTCCGCGTCCTGTTCGGCTCCACGGCTAAGATG 36156 ||||||||| | || ||| ||||| |||||| ||||| |||| | ||| | |||| Sbjct 48543 CTGTTCGGCGACGTGCGCGCCGGCAAGGTCCGCTTCCTGATCGGGAGCTCGGACACGATG 48602 Query 36157 GGTGCCGGCATGAACGTGCAAAACAGGCTGGTGGCTCTCCACCACCTCGACGCACCATGG 36216 || ||||| | |||| ||| | || ||| | || |||||||||| || ||| Sbjct 48603 GGGACCGGCGTCAACGCGCAGCTGCGCCTCAAGGCCTTGCATCACCTCGACGTGCCGTGG 48662 Query 36217 CGCCCGTCTGACCTCGAACAGCGCGAGGGCCGCATCATCCGTCAGGGTAACGAGC 36271 | ||||| | |||| |||||||||||||||||| | || ||||| ||| ||| Sbjct 48663 CTGCCGTCGCAGATCGAGCAGCGCGAGGGCCGCATCGTGCGCCAGGGCAACCAGC 48717 >seq24986 Length=52538 Score = 95.1 bits (104), Expect = 5e-15 Identities = 168/243 (69%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 36033 GGGCATCCCAGAGGCCGAGATCGCCTTCATCCACGACGCGAACA---CCGAGCTTCAGAA 36089 |||| | || | | |||||||||||||||| || ||| || | ||||| | Sbjct 14436 GGGCGTGCCCGCGTCCGAGATCGCCTTCATGCAGGACTACAAGAAATCCGAGGCG----A 14381 Query 36090 AGAAGAGC-TGTTCGGCAAGGTCCGCACCGGCCGCGTCCGCGTCCTGTTCGGCTCCACGG 36148 || || || | |||||| | || || |||| |||||| ||||| ||||||| | | Sbjct 14380 AGCAGCGCCTCTTCGGCGACGTGCGTGCCGGAAAGGTCCGCTTCCTGATCGGCTCGTCCG 14321 Query 36149 CTAAGATGGGTGCCGGCATGAACGTGCAAAACAGGCTGGTGGCTCTCCACCACCTCGACG 36208 | |||||| |||| |||| | ||| | || ||| || || |||||||||| Sbjct 14320 ACACGATGGGGACCGGTGTGAATGCGCAGTTGCGACTCAAGGCCCTGCATCACCTCGACG 14261 Query 36209 CACCATGGCGCCCGTCTGACCTCGAACAGCGCGAGGGCCGCATCATCCGTCAGGGTAACG 36268 || |||| ||||| | |||| |||||||||||||||||| | || ||||| ||| Sbjct 14260 TCCCCTGGCTGCCGTCGCAAATCGAGCAGCGCGAGGGCCGCATCGTGCGGCAGGGCAACC 14201 Query 36269 AGC 36271 ||| Sbjct 14200 AGC 14198 >seq24987 Length=52459 Score = 86.0 bits (94), Expect = 2e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 36097 CTGTTCGGCAAGGTCCGCACCGGCCGCGTCCGCGTCCTGTTCGGCTCCACGGCTAAGATG 36156 |||||||| | || ||| ||||| ||||| ||||| |||||||| | | | |||| Sbjct 49983 CTGTTCGGTGACGTGCGCGCCGGCAAGATCCGCTTCCTGGTCGGCTCCTCCGACACGATG 50042 Query 36157 GGTGCCGGCATGAACGTGCAAAACAGGCTGGTGGCTCTCCACCACCTCGACGCACCATGG 36216 || |||| | || | ||| | ||| ||| | || |||||||||| |||||| Sbjct 50043 GGCACCGGTGTCAATGCGCAGCTGCGCCTGAAGGCGTTGCATCACCTCGACGTGCCATGG 50102 Query 36217 CGCCCGTCTGACCTCGAACAGCGCGAGGGCCGCATCATCCGTCAGGGTAA 36266 | ||||| | |||| ||||| |||||||||||| | || ||||| || Sbjct 50103 CTGCCGTCGCAGATCGAGCAGCGTGAGGGCCGCATCGTGCGACAGGGCAA 50152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194032370651504