Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq27440 98.7 8e-16 >seq27440 Length=426762 Score = 98.7 bits (108), Expect = 8e-16 Identities = 194/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29883 |||| || ||||| || | | || || || || || || | || |||||||| || Sbjct 329451 TAGAGATGCGCGTCGCCGAACGAATGCACGAAATCGCCGGGCTTCAGACCGGTGACCTGC 329392 Query 29884 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 29943 |||| ||| ||||| || |||||| ||||||||| ||||| || ||||| | | Sbjct 329391 GCCACCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCGAGGAAGACG 329332 Query 29944 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30003 || | || | ||| ||||||||||| || |||| |||| | ||||| ||||| || Sbjct 329331 TCGGCGGAGCGCTGATAGAGCTGACAGGACAGCTTGCCGTTGGCGACGTAGAACTGGAAC 329272 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30063 | | |||||||| || || ||||| | | | || || ||||| || | ||| Sbjct 329271 AGGCAATGGCACGGCGGCAGCGCCATCTTGTCGACCTCGGCCGGATTCCACGCCGAGACG 329212 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 30110 || | ||| | || || ||| | |||| | ||||||| |||| Sbjct 329211 ATCAGGCGGCGCGAGTCCGGATTGCGCTTGATCATGTCCACGACGTT 329165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408335023307966