Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq34749 111 5e-20 >seq34749 Length=109604 Score = 111 bits (122), Expect = 5e-20 Identities = 196/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 25993 TAGCGCTCAACGCCGTCCTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAA 26049 ||||| || ||||||||| ||| || || ||||| | || || ||||| || ||| Sbjct 1506 TAGCGATCCTTGCCGTCCTTGTCCTGCCATTTTCGGGTCTGGAGCTGGCCCTCGATATAA 1447 Query 26050 ACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCT--CCGCTACCTTGCC-AAACAGC 26106 |||| || || |||||||| || | | || |||| | | ||||| | ||| | | Sbjct 1446 ACCTTGGAGCCCTTCTTCAGATATTGCTCGGCAATCTTGCAGAGACCTTCACTAAAGATC 1387 Query 26107 ACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTT 26166 ||||||||||||||||| ||| ||||||| ||||||| | ||| ||| |||| | Sbjct 1386 ACGACGCGATGCCATTCCGTCTTTTCTTTCCGCTCGCCGGAGTTCTTGTCGCGCCAGGTA 1327 Query 26167 TCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCT 26226 || |||||||| ||| | | ||||||| | | || | || || ||| || Sbjct 1326 TCCGAGGTCGCAACGCTCAGATTGGCGATCGGACGACCGTCCTGCGTGCGCTTGATTTCA 1267 Query 26227 GGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGC 26269 || ||| || || || ||||| || || |||||||| |||| Sbjct 1266 GGGTCGGCGCCGAGATTTCCGACCAGAATGACTTTATTGACGC 1224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159709913103172