Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq55600 93.3 2e-14 seq24082 84.2 9e-12 >seq55600 Length=68428 Score = 93.3 bits (102), Expect = 2e-14 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 5616 GAGGAGTTCGACTATGGATATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5675 || ||||||||||| || |||| ||| ||||| ||||| || ||||| |||||||||||| Sbjct 47720 GACGAGTTCGACTACGGCTATGTGCTGACCGTGCACAAATCCCAGGGTTCCCAGTGGAAC 47661 Query 5676 AACGTCCTGCTGTTTGATGAGTGGTACG---GGAAGGA---CCGGAAGGAATGGTTGTAC 5729 ||||| ||||||| || ||| | | || |||| ||| ||| | ||| Sbjct 47660 GACGTCGTGCTGTTCGACGAGAGCTTCGCCTTCCAGGACAGCCGCGCCCGCTGGCTCTAC 47601 Query 5730 ACCGCCATTACCCGGGCCGCGGAACG 5755 |||| ||||||||| |||||| |||| Sbjct 47600 ACCGGCATTACCCGCGCCGCGAAACG 47575 Score = 84.2 bits (92), Expect = 9e-12 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 4649 GCCCGTGTTCCAGCTCGCCGGGTACGCCGGAACCGGCAAGACCACCCTGGCCAAACACCT 4708 ||| ||||||| ||| ||| || ||||| |||||||||||||||||||| || | Sbjct 48582 GCCGGTGTTCCGGCTGTTCGGCTATGCCGGCACCGGCAAGACCACCCTGGCGCGGCATAT 48523 Query 4709 CGCCGCGACCGTCAACGGTCCCGTGTACTTCGCCGCCTACACCGGCAAGGCCGC 4762 ||| | ||||||||| |||| | ||||| || | ||||||||||||||| Sbjct 48522 CGCGGACGGCGTCAACGGCAACGTGAAATTCGCAGCGTTCACCGGCAAGGCCGC 48469 >seq24082 Length=208990 Score = 84.2 bits (92), Expect = 9e-12 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 4649 GCCCGTGTTCCAGCTCGCCGGGTACGCCGGAACCGGCAAGACCACCCTGGCCAAACACCT 4708 ||| ||||||| || ||| | ||||| |||||||||||||| ||||| ||| | Sbjct 158835 GCCGGTGTTCCGCCTGTTCGGCTTTGCCGGCACCGGCAAGACCACGCTGGCGCGGCACAT 158776 Query 4709 CGCCGCGACCGTCAACGGTCCCGTGTACTTCGCCGCCTACACCGGCAAGGCCGCTCACGT 4768 ||||| | |||| | || ||| | |||||||||| ||||||||||||||| | ||| Sbjct 158775 CGCCGAGGGCGTCGATGGCGAGGTGAAGTTCGCCGCCTTCACCGGCAAGGCCGCACTCGT 158716 Query 4769 C 4769 | Sbjct 158715 C 158715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195480993894716