Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq35820 89.7 4e-13 seq55950 87.8 1e-12 seq18839 82.4 6e-11 >seq35820 Length=5258 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || || || || ||||| ||||||| || | | | || || | |||||||| || || Sbjct 2 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTACCAGCGAAG 61 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 || | |||||| || ||||| ||||| || || || || || || ||||| || || | Sbjct 62 ATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTC 121 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | ||||| | || || || || |||| || |||||||| | || || || Sbjct 122 TCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 181 Query 101459 AATATCTGCATGGT 101472 || ||||||||||| Sbjct 182 AAGATCTGCATGGT 195 >seq55950 Length=6881 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| ||||||| || | | || || | ||| Sbjct 719 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGC 778 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || || | |||||| || |||||||||||||| || || || || || || Sbjct 779 TTACCGGCGAAGATAAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTC 838 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | ||||| | || || || ||||| | ||| || ||||| Sbjct 839 TGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAATCGTCTTACCGGTG 898 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || || ||||| Sbjct 899 AGGGTCTTCACGAAGATTTGCAT 921 >seq18839 Length=217 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 || || || ||||| ||||||| || | | | || || | ||||| || || || || Sbjct 2 TTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATA 61 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 | ||||| || || || ||||||||||| || || || || || || || || | || Sbjct 62 AGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCG 121 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | ||||| || || || || || |||| ||| |||||||| | || || || || Sbjct 122 ATCGTGTCGCTCGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAG 181 Query 101462 ATCTGCAT 101469 |||||||| Sbjct 182 ATCTGCAT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396004356396894