Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq54303 134 9e-27 seq34750 113 3e-20 seq27440 84.2 1e-11 seq32030 82.4 5e-11 >seq54303 Length=793959 Score = 134 bits (148), Expect = 9e-27 Identities = 199/273 (73%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGA-GCGTCTGAAGTA 79607 || |||||||| | |||||| |||||| || | ||||| || ||| |||||| | Sbjct 464539 ACCACCAACAACCAGATGGAACTGATGGCGGCGATCTCCGCGCTCGAAGCG-CTGAAGAA 464481 Query 79608 CCCCTGCAACGT-GATC-CTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTC 79665 || |||| || |||| || || |||||||||||||| | | | ||||| ||| | Sbjct 464480 GCCGTGCACGGTCGATCTCTACA--CCGACAGCCAGTATGTCCGACAAGGCATCACGGGC 464423 Query 79666 TGGATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAAC 79725 ||||| ||||||||||| ||||| ||| ||| | || |||||||| || || || Sbjct 464422 TGGATCTTCGGCTGGAAGCGCAACGGCTGGCGCACCGCCGACAAGAAGCCGGTGAAGAAT 464363 Query 79726 GTCGATCTCTGGAAACGTCTTGATGCGGC-CGCCAGCCGTCACAATGTCCGCTGGAAGTG 79784 ||||| || ||| | || || ||||| || | ||| | ||| | ||||||||| | || Sbjct 464362 GTCGAGCTGTGGCAGCGCCTGGATGCCGCGCTGAAGCAG-CACGAAGTCCGCTGGCACTG 464304 Query 79785 GGTTAAAGGTCATGCCGGTCATCGCGAGAACGA 79817 ||| || || |||||||| || | ||||||||| Sbjct 464303 GGTCAAGGGCCATGCCGGCCACCCCGAGAACGA 464271 >seq34750 Length=407197 Score = 113 bits (124), Expect = 3e-20 Identities = 197/274 (72%), Gaps = 12/274 (4%) Strand=Plus/Plus Query 79550 CGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGA-GCGTCTGAAGTAC 79608 |||||||||| || |||||| |||||| || | ||||| || ||| |||||| | Sbjct 211773 CGACCAACAACCGCATGGAGTTGATGGCGGCGATCTCGGCGCTCGAAGCG-CTGAAGAAA 211831 Query 79609 CCCTGCAACGT--GATC-CTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTC 79665 || ||| || |||| | || |||||||||||||| | | ||||| || | Sbjct 211832 CCG-GCATCGGTCGATCTCACCA--CCGACAGCCAGTATGTCCGTCAGGGCATCACCAGC 211888 Query 79666 TGGATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAAC 79725 ||||| | ||||||||| ||||| |||| || | || |||||||| ||||| ||| Sbjct 211889 TGGATTCACAACTGGAAGCGCAACGGCTGGAAGACCGCCGACAAGAAGCCCGTCAAGAAC 211948 Query 79726 GTCGATCTCTGGAAACGTCTTGATGCGGC-CGCCAGCCGTCACAATGTCCGCTGGAAGTG 79784 | |||||| ||| | || ||||||||||| | || | ||||| || |||||| | || Sbjct 211949 GCCGATCTGTGGCAGCGGCTTGATGCGGCGCTGAAGTC-CCACAAGGTTCGCTGGCACTG 212007 Query 79785 GGTTAAAGGTCATGCCGGTCATCGC-GAGAACGA 79817 | | || || |||||||| || ||| || ||||| Sbjct 212008 GATCAAGGGCCATGCCGGGCA-CGCGGAAAACGA 212040 >seq27440 Length=426762 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 72796 CAACATCCAGTTCCTGAAAGACAATGGCGTCAAAATCTGGGATGCCTGGGCCGATGAAAA 72855 ||||||| | | |||| ||||| ||||||| |||||||| | ||||| |||| || Sbjct 329026 CAACATCAAATACCTGCGCGACAACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAA 329085 Query 72856 TGGCGATTTAGGCCCGGTCTATGGCAAGCAATGGCG 72891 ||||||| | ||||||||||||||| | || ||||| Sbjct 329086 TGGCGATCTCGGCCCGGTCTATGGCCATCAGTGGCG 329121 >seq32030 Length=166927 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/237 (69%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 47685 GGCTACTTCCTGATGGTGCGCGACCTGATGAA----TCACAGCCGTGAAACTGGCATTCC 47740 |||||||||||||| ||| |||| | || || || || | || |||||||| Sbjct 85826 GGCTACTTCCTGATCGTGTCCGACTTCATCAAATGGGCAAAG-AGCCAA---GGCATTCC 85881 Query 47741 TGTCGGGCCAGGTCGTGGTTCCTCTGCCGGTTCTCTGGTGGCGTGGTGCATCGGCATAAC 47800 |||||||| || || || ||| ||||| || ||||| |||||| | ||| || Sbjct 85882 CGTCGGGCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTCGCGTGGGCGCTGACCATCAC 85941 Query 47801 CAACGTCGATCCTATCCGTCACGGTCTTCTGTTTGAGCGTTTCATCAACCCTGAA--CGT 47858 | || ||||||| ||| ||| || ||||| ||||| ||| |||| || ||| ||| Sbjct 85942 CGACCTCGATCCGATCAAGTTCGGCCTGCTGTTCGAGCGCTTCCTCAATCCCGAACGCGT 86001 Query 47859 CTCGACTTACCGGATGCGGATCTGGACTTCAGCCAGGCACGTCGTCATGAGGTGATC 47915 ||||| | ||||| || | || ||| |||||| || || ||||||||| Sbjct 86002 CTCGA--TGCCGGACTTCGACATCGATTTCTGCCAGGATCGCCGCGGCGAGGTGATC 86056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330203492022120