Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq55903 86.0 5e-12 seq26853 82.4 6e-11 >seq55903 Length=2024 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||| | || |||||| ||| || ||||| ||||| || | Sbjct 921 CCGCCACGAAGACGGAGCACGAGGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCC 980 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | ||||||||| || || || || ||||| ||||| | |||| Sbjct 981 AGCGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGGGGGA 1040 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||||| || || | | | || || ||| ||| Sbjct 1041 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCGCTCGACTCGACC 1100 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || | ||||| || || || || | || || || || || ||||| || Sbjct 1101 TCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCATTGT 1150 >seq26853 Length=3834 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| |||| || | || |||| || | |||| Sbjct 246 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGC 187 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| || || | ||||| |||||||||||| ||||| Sbjct 186 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTC 127 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || || ||| ||||| | ||||| || || || ||| Sbjct 126 TGCTTCACGTTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTC 67 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 66 AGCGTCTTGACGAAGATCTGCAT 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380674165221666