Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq53101 129 8e-25 seq24986 107 3e-18 >seq53101 Length=121849 Score = 129 bits (142), Expect = 8e-25 Identities = 206/294 (70%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 145493 CGGGGCGGGCTTCTGGTAGAAGCGCTCGGGCAGGCCGTCGATCTGCTCGACGTTGAACAC 145552 ||| || |||| | | |||||| | || |||| ||| ||||||||||||| ||||| || Sbjct 55510 CGGCGCCGGCTGCCGATAGAAGTGGTCAGGCAATCCGGCGATCTGCTCGACATTGAAGAC 55451 Query 145553 CAGATAGGACTTCAGGAACGGGATCATCCGCTCGACGTCCTTGCCGTTGGCGTCCTTCTC 145612 | ||||| |||||| |||||||| || ||||| || ||| ||| |||| |||| Sbjct 55450 CGAATAGGTCTTCAGAAACGGGATGTCGCGTTCGACCTCGCCGCCATTGCCGTCGGTCTC 55391 Query 145613 GGTCTTCTTGAACTTCGAGGCGTAGACGATCAGTTCGGACTT--CTCGCCCTTGCGGACC 145670 ||| ||||| || |||| || | ||| || | ||||||||||||||| Sbjct 55390 AGTCCGGGTGAACCGGCTCGCATAGATGA--CGGTCGCACCTGACTCGCCCTTGCGGACG 55333 Query 145671 TGACCACCCAGGTCCCTGGCTTGGTTGTAGGTCATCCAGGTCGGGTTGGTGTAGCCGCGC 145730 ||| || | || || | || || ||| | ||||||||||| || |||| | || ||| Sbjct 55332 TGAGCATCAAGCTCGATCGCCTGTTTGAACGTCATCCAGGTTGGCGAGGTGAAACCCCGC 55273 Query 145731 TCCTGGGCGGCGGCCCACAGGAGGACCACGTTGATCCCGGTGTAGCGCTGGCCG 145784 | | || | | ||| || || | |||||| || ||| ||||| | | |||| Sbjct 55272 GCGAGCGCTTCCGACCAGAGCAGCAGCACGTTCATGCCGCTGTAGGGTTCGCCG 55219 >seq24986 Length=52538 Score = 107 bits (118), Expect = 3e-18 Identities = 198/287 (69%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 145500 GGCTTCTGGTAGAAGCGCTCGGGCAGGCCGTCGATCTGCTCGACGTTGAACACCAGATAG 145559 |||||||| ||||| || |||||| |||||||||||||| |||||||| || Sbjct 3852 GGCTTCTGATAGAAATGCGTCGGCAGGTTCTCGATCTGCTCGACATTGAACACTGTGTAA 3911 Query 145560 GACTTCAGGAACGGGATCATCCGCTCGACGTCCTTGCCGTTGGCGTCCTTCTCGGTCTTC 145619 | || ||||||||||| ||| ||||| || |||| | || | || |||||| Sbjct 3912 GTTTTGAGGAACGGGATATCCCGTTCGACTTCGCCGCCGCGCTCATCGGTTTCAGTCTTC 3971 Query 145620 TTGAACTTCGAGGCGTAGACGATCAGTTCG--GACTTCTCGCCCTTGCGGACCTGACCAC 145677 ||||| |||||||| || ||| ||| | ||||| |||||||| || |||| Sbjct 3972 GTGAACCGGCTGGCGTAGATGA-CAG-TCGATCCCGACTCGCTTTTGCGGACATGGCCAC 4029 Query 145678 CCAGGTCCCTGGCTTGGTTGTAGGTCATCCAGGTCGGGTTGGTGTAGCCGCGCTCCTGGG 145737 |||| || | | ||| ||| ||||||||||| ||| | | | |||||| || | Sbjct 4030 CCAGTTCGATCGATTGTTTGAAGGTCATCCAGATCGATGATGCGAAACCGCGCGCCAGCC 4089 Query 145738 CGGCGGCCCACAGGAGGACCACGTTGATCCCGGTGTAGCGCTGGCCG 145784 | | | ||| || | | |||||| || || ||||| ||| |||| Sbjct 4090 CTTCCGACCAAAGCAACAGCACGTTCATGCCAGTGTATGGCTCGCCG 4136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689654498114400