Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq48397 165 1e-35 seq36931 158 2e-33 seq56171 125 1e-23 seq54446 91.5 3e-13 seq54303 87.8 3e-12 seq55600 84.2 4e-11 >seq48397 Length=242080 Score = 165 bits (182), Expect = 1e-35 Identities = 296/421 (70%), Gaps = 16/421 (4%) Strand=Plus/Minus Query 110917 CCGGTCGAGCCGAAGCCGCCCGTGCCACGCTCGGTC-TGGTCAAGCTCCGCAACGACGTC 110975 |||||||||||||||||||| | |||||| |||||| | | |||| | || ||| Sbjct 140289 CCGGTCGAGCCGAAGCCGCCGGCGCCACGATCGGTCGTCGACAAGGTG-GCTACGG---- 140235 Query 110976 GAAACGGATGCGGAC---ATAG--GGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGA 111030 ||| | | |||| | || | ||||||| || ||||| ||||| |||||||| Sbjct 140234 GAACCAGC-GCGGCCTGCATCGCCGGCGCGATCACCATTTGGGCGATGCGCTCGCCGCGC 140176 Query 111031 TTGATGACGAACGGATTGCGGCCGTGGTTGATCAGGATCACCTTGATCTCGCCGCGATAG 111090 ||||| ||||| || |||||| ||||||||||||||||||||||||||||| ||| Sbjct 140175 TTGATCACGAAGGGCGCCGCGCCGTGATTGATCAGGATCACCTTGATCTCGCCGCGGTAG 140116 Query 111091 TCGCTGTCGACGGTACCGGGCGAATTCAGGACAGTGATAGACGA-CTTGGCGGCGAGGCC 111149 || |||| || || ||||| ||||| || || | | || |||||| || ||||| Sbjct 140115 TCCGCATCGATCGTGCCCGGCGAGTTCAGCACGGTAAC-GCCGTGCTTGGCCGCCAGGCC 140057 Query 111150 CGAGCGCGGCCGGACTTGCAGTTCCAGGCCCGCCGGCAGGGCGACCGTGACGCCGGTCGG 111209 ||||||||||| || || || | || || |||| |||| || | ||| ||||| Sbjct 140056 GGAGCGCGGCCGAACCTGGGCCTCGTGCCCGGCGGGCAATGCGATCGCAAGGCCCGTCGG 139997 Query 111210 GATGA-TGCCGACTTCGCCCGCAGCGATAGTAAAGGGTTCATCCTCGGGGATCGCGGCAC 111268 | | || || | ||| | |||| || | || |||| ||| || | ||||| Sbjct 139996 CACCAGCGCATAC-TGGCCGGGGGCGAGCGTCATCGGCTCATTCTCCGGCACGGCGGCCA 139938 Query 111269 GCAAGTCCAGGCCGGCGGACCCACGGGTCTCGTAGGCTGGCAGCGGCAGGCCTTGGGCAT 111328 || ||| || ||||| | | | |||| ||||| ||||||||||| |||| ||| | Sbjct 139937 TCAGGTCGAGACCGGCAGCCTCCGCCGTCTGATAGGCCGGCAGCGGCAGACCTTCGGCGT 139878 Query 111329 G 111329 | Sbjct 139877 G 139877 >seq36931 Length=650932 Score = 158 bits (174), Expect = 2e-33 Identities = 510/777 (66%), Gaps = 36/777 (5%) Strand=Plus/Plus Query 107403 GGGCGGGCACTTCCACGATCTTGTTCGAGAAGCTGA---TCACG-------CGCAGGTCT 107452 ||||||| |||| |||| || ||| |||||| ||| || || ||||| ||| Sbjct 117202 GGGCGGGACCTTC-ACGACCTCGTTTGAGAAGGTGAAGATCTCGACCTCGTCGCAGATCT 117260 Query 107453 TCGGCCGGGATGACCGAGGCTAGGGCGCTAGCCGCGTCGATACGCGTCAGATCGGACTTG 107512 || || || || ||| ||| | | ||||| || ||||||| || |||| Sbjct 117261 -CGCGCGCGAGGAT---GGCAAGGCCACACGCCGCCTCCGCGCGCGTCATTTCCGACTGC 117316 Query 107513 CCCGAGAGCTTCTCGTCCATGGAGCCCGACACGTCCACCATGACCACGGTGCGGCCCGGC 107572 | ||||| || || ||| |||||||||||||| | || || | |||||||||||| Sbjct 117317 GCGGAGAGGGTCGCGAACATCGAGCCCGACACGTCGATCAGGAGCCGGGTGCGGCCCGGA 117376 Query 107573 AGCTTCGG-CATG-TCGGCGATCGAGGCGATCAGCGCTTCGTCCAGGGCCGGTTCGAACG 107630 ||| || |||| || || ||| || || ||| | || || | || ||||| Sbjct 117377 AGC--CGTACATGGTCCTTGACCGATTTGAGCATCGCAGCCTCGAGCTCGGGCTCGAAGT 117434 Query 107631 TCGGCGCCGCACGAGCCGCCGCGATGTAGCGGAACGGCAGGACGCGGTGCGCGCCGCCCT 107690 |||||| || ||||||| |||| |||| | || |||| || | || |||| Sbjct 117435 CCGGCGCGTAGCGCGCCGCCGTGATGAAGCGATAGGGAAGGATTCGATCCGT-CCGCATC 117493 Query 107691 TGCGGGCCTTGATCGCATCGATCACCAGCTTGCGGTCGACTCCGGCCTGCTCCATGTTGC 107750 |||| |||||| | | || ||| ||| || | || ||| || Sbjct 117494 -----GCCTCGATCGCCCCTGCGATGGTCTCGCGCGGGACCAGCGCATTCTGCATCAGGC 117548 Query 107751 GCAGGTTGCGCAGCAGGGCGAGGTAGCCGAGCTTTTTGTCTTCCAGCAGACGGGTGAACT 107810 |||| ||||||||||| || ||| ||||||||| || | | ||| || ||| Sbjct 117549 GCAGATTGCGCAGCAGCGCCAGGCCGCCGAGCTTGCGCTCGGCGATCAGCCGCTCGAAGG 117608 Query 107811 CCGCCTTCTTGTCGCCGCCGGCCGACAGCGCTACTTCCCAGGTGTCCGGCGACTCCAGCG 107870 | | ||||| ||||||||| |||| || ||||||||||| || || | ||| Sbjct 117609 TCTCGCGCTTGTTCTTGCCGGCCGAGAGCGAAACCTCCCAGGTGTCGGGAGAGGCGAGCT 117668 Query 107871 TCTGATCGACCAGCCCCTTGTACAG---GGACTGACGCTCGTCGTTGGCGGCCTTCGGGT 107927 |||||| | | ||| ||| || ||| | | || || |||| || | || Sbjct 117669 CGCCATCGACGAACTGCTTCCACACCTTGGCCTGCCCGGCATCCTT--CGGC-TTGGCGT 117725 Query 107928 GGCTCAGGAACAGCACGTCGCGCAGACGCACTTCCTTGGCGCGGTCGTACTTGGCGATCT 107987 || ||||||||||||||| | | ||||| | | |||| || ||||||||| || Sbjct 117726 GGACCAGGAACAGCACGTCCCTGATCCGCACCGCGCCGTCGCGATCCCACTTGGCGAGCT 117785 Query 107988 GATACGCGTCGAACTTGGCGAACGCCTTGGCGAGGCCGAGCTTCATCTGCTTGGACAGCG 108047 |||| ||||||||||||| | |||| ||| ||||| ||||| |||| || | || Sbjct 117786 GATAGGCGTCGAACTTGGTCAGCGCCCGGGCTAGGCCCTTCTTCACCTGCGCCGAAACCG 117845 Query 108048 GC---GCCTTGCG-GGCGCCGTCGCGCGGTGGGTTGTACTTCCAGTACAGCGCCACCAGT 108103 || |||||| || | ||| || | | | |||||| | ||| | ||| Sbjct 117846 GCTGACGCTTGCGCTGCTGCATCG-GCCCCAGCGCATCCGCCCAGTAGATCGCGAGCAGC 117904 Query 108104 TCCGACAGTTCGTCGGCGCGCTGGATCACGCGGGCGATCGTCTCCGAGACGAGGCCG 108160 |||| || ||||||| ||||||||||| ||||||| ||| |||| ||| |||||| Sbjct 117905 TCCGTCATCTCGTCGGGACGCTGGATCACCCGGGCGAGCGTGTCCGCGACAAGGCCG 117961 >seq56171 Length=386068 Score = 125 bits (138), Expect = 1e-23 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 191906 CCCGATCCGGTCGACATCCATGTGGGCAAGCGCATCCGCATGCGTCGCAAGACTCTCGGC 191965 ||| | || || |||| |||| |||| ||| | |||||||| || | | |||||| Sbjct 38455 CCCAACCCTGTTGACAAATATGTTGGCAGCCGCGTGCGCATGCGCCGGATCATGCTCGGC 38514 Query 191966 GTCAGCCAGGAACAACTCGCCAGCGCGCTGGGTCTGACCTTCCAGCAGGTGCAGAAGTAC 192025 | ||||||||| | |||| | ||||| || ||||| || |||||||||||||| ||| Sbjct 38515 ATGAGCCAGGAAAAGCTCGGCGAAGCGCTCGGCCTGACATTTCAGCAGGTGCAGAAATAC 38574 Query 192026 GAGAAGGGCGGCAATCGCGTCAGCGCGAGCAAGCTGCACGGCATC-GGCAAATTCCTGGG 192084 ||||||||| ||| ||| || |||||||| |||||| ||| | | |||| | | Sbjct 38575 GAGAAGGGCACCAACCGCATCGGCGCGAGCCGGCTGCAACAGATCTCGGATATTCTTCAG 38634 Query 192085 CGTTCCGGTCGCCTTTTTCTTCGAAGGC 192112 || |||||| | ||||| ||||||||| Sbjct 38635 -GTGCCGGTCTCGTTTTTGTTCGAAGGC 38661 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 110997 CGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATTGATGACGAACGGATTGCGGCCGTG 111056 ||||| ||| |||||| ||||| || ||||| ||| ||| || | | ||| || Sbjct 69183 CGCGATGACAAGCTGGGCGATGCGTTCACCGCGCCGGATCGTGAATGGCTCGTCGCCATG 69124 Query 111057 GTTGATCAGGATCACCTTGATCTCGCCGCGATAGTCGCTGTCGACGGTACCGGGCGAATT 111116 ||||||| | ||| | ||||||||||||||| ||||||||| || |||||||| Sbjct 69123 ATTGATCAAAAGCACTGAAACTTCGCCGCGATAGTCGGCGTCGACGGTTCCCGGCGAATT 69064 Query 111117 CAGGACAGTGATAGACGACTTGGCGGCGAGGCCCGAGCGCGGCCGGACTTGCAGTTCCAG 111176 || || || | |||| ||||| || ||||||||||| || ||| || | Sbjct 69063 GAGAACGGTCACGCCATGCTTGAATGCGAGACCGGAGCGCGGCCGCACCTGCGCCTCATG 69004 Query 111177 GCCCGCCGGCAGGGCGACCGTGACGCCGGTCGG 111209 ||||| ||||| ||||| | | | ||||||||| Sbjct 69003 GCCCGGCGGCACGGCGATCATAAGGCCGGTCGG 68971 >seq54446 Length=153271 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 132959 TGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTC 133018 ||| ||||||| |||||| |||||||||||| ||||||||||| ||||||| ||||| Sbjct 25767 TGACGCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTC 25708 Query 133019 AAATCCCTCCCCCGCATCCA 133038 |||||| |||||||| ||| Sbjct 25707 AAATCCTGCCCCCGCAACCA 25688 >seq54303 Length=793959 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 132956 GTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGG 133015 |||| | |||||||||||||| |||||||||||| ||||||||||| |||||| || Sbjct 374796 GTTTAACGCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGG 374737 Query 133016 TTCAAATCCCTCCCCCGCATCCA 133038 ||||||||| ||||||| ||| Sbjct 374736 TTCAAATCCTATCCCCGCAACCA 374714 >seq55600 Length=68428 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 11146 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 11205 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 11206 CCTATCCCCGCAACCA 11221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895131055286640